Gene : Glyma.12G093600 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR31415:SF2 - LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN-RELATED Genomic Order:  936
Name:  ? Glyma.12G093600 Secondary Identifier:  ? PAC:30545455
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G093600 0.5kb upstream 0.5kb upstream 5147 true Chr12: 7654387-7659533 Glycine max
Glyma.12G093600 0.5kb upstream 0.5kb upstream 500 false Chr12: 7659034-7659533 Glycine max
Glyma.12G093600 0.5kb downstream 0.5kb downstream 5147 true Chr12: 7653887-7659033 Glycine max
Glyma.12G093600 0.5kb downstream 0.5kb downstream 500 false Chr12: 7653887-7654386 Glycine max
Glyma.12G093600 1.0kb upstream 1.0kb upstream 5647 true Chr12: 7654387-7660033 Glycine max
Glyma.12G093600 1.0kb upstream 1.0kb upstream 1000 false Chr12: 7659034-7660033 Glycine max
Glyma.12G093600 1.0kb downstream 1.0kb downstream 5647 true Chr12: 7653387-7659033 Glycine max
Glyma.12G093600 1.0kb downstream 1.0kb downstream 1000 false Chr12: 7653387-7654386 Glycine max
Glyma.12G093600 2.0kb upstream 2.0kb upstream 6647 true Chr12: 7654387-7661033 Glycine max
Glyma.12G093600 2.0kb upstream 2.0kb upstream 2000 false Chr12: 7659034-7661033 Glycine max
Glyma.12G093600 2.0kb downstream 2.0kb downstream 6647 true Chr12: 7652387-7659033 Glycine max
Glyma.12G093600 2.0kb downstream 2.0kb downstream 2000 false Chr12: 7652387-7654386 Glycine max
Glyma.12G093600 5.0kb upstream 5.0kb upstream 9647 true Chr12: 7654387-7664033 Glycine max
Glyma.12G093600 5.0kb upstream 5.0kb upstream 5000 false Chr12: 7659034-7664033 Glycine max
Glyma.12G093600 5.0kb downstream 5.0kb downstream 9647 true Chr12: 7649387-7659033 Glycine max
Glyma.12G093600 5.0kb downstream 5.0kb downstream 5000 false Chr12: 7649387-7654386 Glycine max
Glyma.12G093600 10.0kb upstream 10.0kb upstream 14647 true Chr12: 7654387-7669033 Glycine max
Glyma.12G093600 10.0kb upstream 10.0kb upstream 10000 false Chr12: 7659034-7669033 Glycine max
Glyma.12G093600 10.0kb downstream 10.0kb downstream 14647 true Chr12: 7644387-7659033 Glycine max
Glyma.12G093600 10.0kb downstream 10.0kb downstream 10000 false Chr12: 7644387-7654386 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298567 5265 Fabidae View MSA
124067618 5270 Rosid View MSA
123748303 5271 Pentapetalae View MSA
122796873 5272 Eudicot View MSA
122050146 5273 Angiosperm View MSA
121351108 5274 Embryophyte View MSA
123382008 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0380126 0.0 0.154856 Low Low
cufflinks 3.60005 0.0 10.4821   High
cufflinks 0.289741 0.0 1.08405    
cufflinks 2.92327 0.0 8.75888    
cufflinks 0.664209 0.0 2.37637    
cufflinks 0.664334 0.0 2.37388    
cufflinks 3.53195 0.0 10.3789   High
cufflinks 0.668587 0.0 2.38991    
cufflinks 0.456727 0.0 1.67097    
cufflinks 0.356        
cufflinks 0.004     Low Low
cufflinks 0.527        
cufflinks 0.144        
cufflinks 0.241        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.468        
cufflinks 0.003     Low Low
cufflinks 1.612       High
cufflinks 1.305       High
cufflinks 0.213        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.371        
cufflinks 0.391        
cufflinks 0.004     Low Low
cufflinks 0.404        
cufflinks 0.019     Low  

0 Strain