Gene : Glyma.12G096200 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11410 - ATP SYNTHASE SUBUNIT A Genomic Order:  962
Name:  ? Glyma.12G096200 Secondary Identifier:  ? PAC:30545740
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6126 Glycine max pathologic  
Gmax PWY-7219 Glycine max pathologic  
Gmax PWY-7229 Glycine max pathologic  
Gmax PWY-841 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G096200 0.5kb upstream 0.5kb upstream 818 true Chr12: 8106026-8106843 Glycine max
Glyma.12G096200 0.5kb upstream 0.5kb upstream 500 false Chr12: 8106344-8106843 Glycine max
Glyma.12G096200 0.5kb downstream 0.5kb downstream 818 true Chr12: 8105526-8106343 Glycine max
Glyma.12G096200 0.5kb downstream 0.5kb downstream 500 false Chr12: 8105526-8106025 Glycine max
Glyma.12G096200 1.0kb upstream 1.0kb upstream 1318 true Chr12: 8106026-8107343 Glycine max
Glyma.12G096200 1.0kb upstream 1.0kb upstream 1000 false Chr12: 8106344-8107343 Glycine max
Glyma.12G096200 1.0kb downstream 1.0kb downstream 1318 true Chr12: 8105026-8106343 Glycine max
Glyma.12G096200 1.0kb downstream 1.0kb downstream 1000 false Chr12: 8105026-8106025 Glycine max
Glyma.12G096200 2.0kb upstream 2.0kb upstream 2318 true Chr12: 8106026-8108343 Glycine max
Glyma.12G096200 2.0kb upstream 2.0kb upstream 2000 false Chr12: 8106344-8108343 Glycine max
Glyma.12G096200 2.0kb downstream 2.0kb downstream 2318 true Chr12: 8104026-8106343 Glycine max
Glyma.12G096200 2.0kb downstream 2.0kb downstream 2000 false Chr12: 8104026-8106025 Glycine max
Glyma.12G096200 5.0kb upstream 5.0kb upstream 5318 true Chr12: 8106026-8111343 Glycine max
Glyma.12G096200 5.0kb upstream 5.0kb upstream 5000 false Chr12: 8106344-8111343 Glycine max
Glyma.12G096200 5.0kb downstream 5.0kb downstream 5318 true Chr12: 8101026-8106343 Glycine max
Glyma.12G096200 5.0kb downstream 5.0kb downstream 5000 false Chr12: 8101026-8106025 Glycine max
Glyma.12G096200 10.0kb upstream 10.0kb upstream 10318 true Chr12: 8106026-8116343 Glycine max
Glyma.12G096200 10.0kb upstream 10.0kb upstream 10000 false Chr12: 8106344-8116343 Glycine max
Glyma.12G096200 10.0kb downstream 10.0kb downstream 10318 true Chr12: 8096026-8106343 Glycine max
Glyma.12G096200 10.0kb downstream 10.0kb downstream 10000 false Chr12: 8096026-8106025 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029216 5273 Angiosperm View MSA
122244902 5265 Fabidae Singleton cluster - no MSA
123989135 5270 Rosid Singleton cluster - no MSA
123743149 5271 Pentapetalae View MSA
122797744 5272 Eudicot View MSA
121348660 5274 Embryophyte View MSA
123428637 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.5259 0.0 105.824 High High
cufflinks 4.7842 0.0 51.5644    
cufflinks 2.61481 0.0 26.5719    
cufflinks 47.9052 0.0 184.532 High High
cufflinks 1.23248 0.0 17.726    
cufflinks 0.511648 0.0 11.5339   Low
cufflinks 30.8209 0.0 168.85 High High
cufflinks 1.83325 0.0 22.6552    
cufflinks 1.57441 0.0 19.0993    
cufflinks 1.477        
cufflinks 0.125       Low
cufflinks 0.873        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.497        
cufflinks 0.305        
cufflinks 1.596        
cufflinks 0.102       Low
cufflinks 0.802        
cufflinks 1.463        
cufflinks 1.649        
cufflinks 0.077       Low
cufflinks 1.282        
cufflinks 2.657       High
cufflinks 0.181        
cufflinks 1.731        
cufflinks 0.09       Low

0 Strain