Gene : Glyma.12G088400 G. max Wm82.a2.v1
Defline:  (1 of 17) PTHR10593//PTHR10593:SF27 - SERINE/THREONINE-PROTEIN KINASE RIO Genomic Order:  884
Name:  ? Glyma.12G088400 Secondary Identifier:  ? PAC:30547841
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Ontology Annotation Displayer

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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G088400 0.5kb upstream 0.5kb upstream 4334 true Chr12: 7207187-7211520 Glycine max
Glyma.12G088400 0.5kb upstream 0.5kb upstream 500 false Chr12: 7211021-7211520 Glycine max
Glyma.12G088400 0.5kb downstream 0.5kb downstream 4334 true Chr12: 7206687-7211020 Glycine max
Glyma.12G088400 0.5kb downstream 0.5kb downstream 500 false Chr12: 7206687-7207186 Glycine max
Glyma.12G088400 1.0kb upstream 1.0kb upstream 4834 true Chr12: 7207187-7212020 Glycine max
Glyma.12G088400 1.0kb upstream 1.0kb upstream 1000 false Chr12: 7211021-7212020 Glycine max
Glyma.12G088400 1.0kb downstream 1.0kb downstream 4834 true Chr12: 7206187-7211020 Glycine max
Glyma.12G088400 1.0kb downstream 1.0kb downstream 1000 false Chr12: 7206187-7207186 Glycine max
Glyma.12G088400 2.0kb upstream 2.0kb upstream 5834 true Chr12: 7207187-7213020 Glycine max
Glyma.12G088400 2.0kb upstream 2.0kb upstream 2000 false Chr12: 7211021-7213020 Glycine max
Glyma.12G088400 2.0kb downstream 2.0kb downstream 5834 true Chr12: 7205187-7211020 Glycine max
Glyma.12G088400 2.0kb downstream 2.0kb downstream 2000 false Chr12: 7205187-7207186 Glycine max
Glyma.12G088400 5.0kb upstream 5.0kb upstream 8834 true Chr12: 7207187-7216020 Glycine max
Glyma.12G088400 5.0kb upstream 5.0kb upstream 5000 false Chr12: 7211021-7216020 Glycine max
Glyma.12G088400 5.0kb downstream 5.0kb downstream 8834 true Chr12: 7202187-7211020 Glycine max
Glyma.12G088400 5.0kb downstream 5.0kb downstream 5000 false Chr12: 7202187-7207186 Glycine max
Glyma.12G088400 10.0kb upstream 10.0kb upstream 13834 true Chr12: 7207187-7221020 Glycine max
Glyma.12G088400 10.0kb upstream 10.0kb upstream 10000 false Chr12: 7211021-7221020 Glycine max
Glyma.12G088400 10.0kb downstream 10.0kb downstream 13834 true Chr12: 7197187-7211020 Glycine max
Glyma.12G088400 10.0kb downstream 10.0kb downstream 10000 false Chr12: 7197187-7207186 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027572 5273 Angiosperm View MSA
122253929 5265 Fabidae View MSA
124060498 5270 Rosid View MSA
123741647 5271 Pentapetalae View MSA
122787233 5272 Eudicot View MSA
121297208 5274 Embryophyte View MSA
123428588 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.30617 0.0 4.5649    
cufflinks 0.0265477 0.0 0.113394 Low Low
cufflinks 0.613382 0.0 2.24959    
cufflinks 0.278846 0.0 1.06333    
cufflinks 2.60208 0.0 8.41397    
cufflinks 2.31194 0.0 7.58367    
cufflinks 0.0122411 0.0 0.0560668 Low Low
cufflinks 10.8238 0.0 29.4007   High
cufflinks 2.89539 0.0 9.1853    
cufflinks 0.491        
cufflinks 0.757        
cufflinks 0.447        
cufflinks 0.485        
cufflinks 1.051       High
cufflinks 0.103        
cufflinks 0.034     Low Low
cufflinks 0.96       High
cufflinks 0.11     Low  
cufflinks 0.123        
cufflinks 0.066     Low Low
cufflinks 0.815        
cufflinks 0.073     Low Low
cufflinks 0.054     Low Low
cufflinks 1.444       High
cufflinks 0.09     Low  
cufflinks 0.666        

0 Strain