Gene : Glyma.12G078100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Genomic Order:  781
Name:  ? Glyma.12G078100 Secondary Identifier:  ? PAC:30547779
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G078100 0.5kb upstream 0.5kb upstream 4260 true Chr12: 6086794-6091053 Glycine max
Glyma.12G078100 0.5kb upstream 0.5kb upstream 500 false Chr12: 6086794-6087293 Glycine max
Glyma.12G078100 0.5kb downstream 0.5kb downstream 4260 true Chr12: 6087294-6091553 Glycine max
Glyma.12G078100 0.5kb downstream 0.5kb downstream 500 false Chr12: 6091054-6091553 Glycine max
Glyma.12G078100 1.0kb upstream 1.0kb upstream 4760 true Chr12: 6086294-6091053 Glycine max
Glyma.12G078100 1.0kb upstream 1.0kb upstream 1000 false Chr12: 6086294-6087293 Glycine max
Glyma.12G078100 1.0kb downstream 1.0kb downstream 4760 true Chr12: 6087294-6092053 Glycine max
Glyma.12G078100 1.0kb downstream 1.0kb downstream 1000 false Chr12: 6091054-6092053 Glycine max
Glyma.12G078100 2.0kb upstream 2.0kb upstream 5760 true Chr12: 6085294-6091053 Glycine max
Glyma.12G078100 2.0kb upstream 2.0kb upstream 2000 false Chr12: 6085294-6087293 Glycine max
Glyma.12G078100 2.0kb downstream 2.0kb downstream 5760 true Chr12: 6087294-6093053 Glycine max
Glyma.12G078100 2.0kb downstream 2.0kb downstream 2000 false Chr12: 6091054-6093053 Glycine max
Glyma.12G078100 5.0kb upstream 5.0kb upstream 8760 true Chr12: 6082294-6091053 Glycine max
Glyma.12G078100 5.0kb upstream 5.0kb upstream 5000 false Chr12: 6082294-6087293 Glycine max
Glyma.12G078100 5.0kb downstream 5.0kb downstream 8760 true Chr12: 6087294-6096053 Glycine max
Glyma.12G078100 5.0kb downstream 5.0kb downstream 5000 false Chr12: 6091054-6096053 Glycine max
Glyma.12G078100 10.0kb upstream 10.0kb upstream 13760 true Chr12: 6077294-6091053 Glycine max
Glyma.12G078100 10.0kb upstream 10.0kb upstream 10000 false Chr12: 6077294-6087293 Glycine max
Glyma.12G078100 10.0kb downstream 10.0kb downstream 13760 true Chr12: 6087294-6101053 Glycine max
Glyma.12G078100 10.0kb downstream 10.0kb downstream 10000 false Chr12: 6091054-6101053 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301979 5265 Fabidae View MSA
124066772 5270 Rosid View MSA
123747305 5271 Pentapetalae View MSA
122795365 5272 Eudicot View MSA
122048196 5273 Angiosperm View MSA
121346372 5274 Embryophyte View MSA
123427883 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 89.7766 0.0 298.741 High High
cufflinks 100.869 0.0 343.424 High High
cufflinks 19.1842 0.0 51.8164   Low
cufflinks 57.0648 0.0 174.048 High  
cufflinks 57.6104 0.0 176.47 High  
cufflinks 43.278 0.0 126.73 High  
cufflinks 58.6192 0.0 179.669 High  
cufflinks 39.4357 0.0 114.062 High  
cufflinks 44.3711 0.0 130.52 High  
cufflinks 34.17     High  
cufflinks 8.547     High  
cufflinks 38.963     High  
cufflinks 38.024     High  
cufflinks 43.039     High  
cufflinks 9.561     High  
cufflinks 131.213     High High
cufflinks 8.793     High  
cufflinks 43.699     High  
cufflinks 74.431     High  
cufflinks 86.606     High  
cufflinks 4.096       Low
cufflinks 86.149     High  
cufflinks 142.031     High High
cufflinks 2.517       Low
cufflinks 106.004     High High
cufflinks 5.16       Low

0 Strain