Gene : Glyma.12G080900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10459:SF10 - DNA LIGASE 1 Genomic Order:  809
Name:  ? Glyma.12G080900 Secondary Identifier:  ? PAC:30548642
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G080900 0.5kb upstream 0.5kb upstream 8310 true Chr12: 6380239-6388548 Glycine max
Glyma.12G080900 0.5kb upstream 0.5kb upstream 500 false Chr12: 6388049-6388548 Glycine max
Glyma.12G080900 0.5kb downstream 0.5kb downstream 8310 true Chr12: 6379739-6388048 Glycine max
Glyma.12G080900 0.5kb downstream 0.5kb downstream 500 false Chr12: 6379739-6380238 Glycine max
Glyma.12G080900 1.0kb upstream 1.0kb upstream 8810 true Chr12: 6380239-6389048 Glycine max
Glyma.12G080900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 6388049-6389048 Glycine max
Glyma.12G080900 1.0kb downstream 1.0kb downstream 8810 true Chr12: 6379239-6388048 Glycine max
Glyma.12G080900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 6379239-6380238 Glycine max
Glyma.12G080900 2.0kb upstream 2.0kb upstream 9810 true Chr12: 6380239-6390048 Glycine max
Glyma.12G080900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 6388049-6390048 Glycine max
Glyma.12G080900 2.0kb downstream 2.0kb downstream 9810 true Chr12: 6378239-6388048 Glycine max
Glyma.12G080900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 6378239-6380238 Glycine max
Glyma.12G080900 5.0kb upstream 5.0kb upstream 12810 true Chr12: 6380239-6393048 Glycine max
Glyma.12G080900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 6388049-6393048 Glycine max
Glyma.12G080900 5.0kb downstream 5.0kb downstream 12810 true Chr12: 6375239-6388048 Glycine max
Glyma.12G080900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 6375239-6380238 Glycine max
Glyma.12G080900 10.0kb upstream 10.0kb upstream 17810 true Chr12: 6380239-6398048 Glycine max
Glyma.12G080900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 6388049-6398048 Glycine max
Glyma.12G080900 10.0kb downstream 10.0kb downstream 17810 true Chr12: 6370239-6388048 Glycine max
Glyma.12G080900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 6370239-6380238 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305144 5265 Fabidae View MSA
124060401 5270 Rosid View MSA
123746296 5271 Pentapetalae View MSA
122793355 5272 Eudicot View MSA
122047557 5273 Angiosperm View MSA
121348285 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.0651 0.0 11.4166   Low
cufflinks 5.88981 0.0 16.0405    
cufflinks 5.72799 0.0 15.6288    
cufflinks 6.23284 0.0 16.9104    
cufflinks 6.76956 0.0 18.2782    
cufflinks 3.83429 0.0 10.8217   Low
cufflinks 7.76646 0.0 20.8643   High
cufflinks 5.40932 0.0 14.8096    
cufflinks 5.86088 0.0 15.9575    
cufflinks 1.579        
cufflinks 0.933       Low
cufflinks 2.401        
cufflinks 2.757       High
cufflinks 3.146       High
cufflinks 0.91       Low
cufflinks 1.439        
cufflinks 1.414        
cufflinks 2.114        
cufflinks 3.52       High
cufflinks 0.936       Low
cufflinks 1.034        
cufflinks 1.172        
cufflinks 2.519       High
cufflinks 1.224        
cufflinks 1.098        
cufflinks 1.302        

0 Strain