Gene : Glyma.12G139200 G. max Wm82.a2.v1
Defline:  (1 of 477) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  1392
Name:  ? Glyma.12G139200 Secondary Identifier:  ? PAC:30545649
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G139200 0.5kb upstream 0.5kb upstream 4390 true Chr12: 17062727-17067116 Glycine max
Glyma.12G139200 0.5kb upstream 0.5kb upstream 500 false Chr12: 17066617-17067116 Glycine max
Glyma.12G139200 0.5kb downstream 0.5kb downstream 4390 true Chr12: 17062227-17066616 Glycine max
Glyma.12G139200 0.5kb downstream 0.5kb downstream 500 false Chr12: 17062227-17062726 Glycine max
Glyma.12G139200 1.0kb upstream 1.0kb upstream 4890 true Chr12: 17062727-17067616 Glycine max
Glyma.12G139200 1.0kb upstream 1.0kb upstream 1000 false Chr12: 17066617-17067616 Glycine max
Glyma.12G139200 1.0kb downstream 1.0kb downstream 4890 true Chr12: 17061727-17066616 Glycine max
Glyma.12G139200 1.0kb downstream 1.0kb downstream 1000 false Chr12: 17061727-17062726 Glycine max
Glyma.12G139200 2.0kb upstream 2.0kb upstream 5890 true Chr12: 17062727-17068616 Glycine max
Glyma.12G139200 2.0kb upstream 2.0kb upstream 2000 false Chr12: 17066617-17068616 Glycine max
Glyma.12G139200 2.0kb downstream 2.0kb downstream 5890 true Chr12: 17060727-17066616 Glycine max
Glyma.12G139200 2.0kb downstream 2.0kb downstream 2000 false Chr12: 17060727-17062726 Glycine max
Glyma.12G139200 5.0kb upstream 5.0kb upstream 8890 true Chr12: 17062727-17071616 Glycine max
Glyma.12G139200 5.0kb upstream 5.0kb upstream 5000 false Chr12: 17066617-17071616 Glycine max
Glyma.12G139200 5.0kb downstream 5.0kb downstream 8890 true Chr12: 17057727-17066616 Glycine max
Glyma.12G139200 5.0kb downstream 5.0kb downstream 5000 false Chr12: 17057727-17062726 Glycine max
Glyma.12G139200 10.0kb upstream 10.0kb upstream 13890 true Chr12: 17062727-17076616 Glycine max
Glyma.12G139200 10.0kb upstream 10.0kb upstream 10000 false Chr12: 17066617-17076616 Glycine max
Glyma.12G139200 10.0kb downstream 10.0kb downstream 13890 true Chr12: 17052727-17066616 Glycine max
Glyma.12G139200 10.0kb downstream 10.0kb downstream 10000 false Chr12: 17052727-17062726 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305479 5265 Fabidae View MSA
124065656 5270 Rosid View MSA
123746310 5271 Pentapetalae View MSA
122791948 5272 Eudicot View MSA
122051373 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.0609 0.0 120.217 High High
cufflinks 24.9697 0.0 67.7889 High  
cufflinks 19.2547 0.0 53.3371    
cufflinks 23.3823 0.0 63.776 High  
cufflinks 37.9616 0.0 101.419 High High
cufflinks 24.4639 0.0 66.4794 High  
cufflinks 12.483 0.0 36.1845   Low
cufflinks 32.8925 0.0 88.1972 High  
cufflinks 27.4198 0.0 74.0372 High  
cufflinks 3.057        
cufflinks 1.572       Low
cufflinks 3.674        
cufflinks 6.326       High
cufflinks 8.418     High High
cufflinks 2.025        
cufflinks 2.189        
cufflinks 2.974        
cufflinks 3.546        
cufflinks 4.041        
cufflinks 1.78        
cufflinks 2.197        
cufflinks 1.96        
cufflinks 3.646        
cufflinks 1.771       Low
cufflinks 2.024        
cufflinks 2.519        

0 Strain