Gene : Glyma.12G122900 G. max Wm82.a2.v1
Defline:  (1 of 5) 1.1.1.86 - Ketol-acid reductoisomerase (NADP(+)) / Dihydroxyisovalerate dehydrogenase (isomerizing) Genomic Order:  1229
Name:  ? Glyma.12G122900 Secondary Identifier:  ? PAC:30546485
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax BRANCHED-CHAIN-AA-SYN-PWY Glycine max pathologic  
Gmax ILEUSYN-PWY Glycine max pathologic  
Gmax PWY-3001 Glycine max pathologic  
Gmax VALSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G122900 0.5kb upstream 0.5kb upstream 4607 true Chr12: 13453868-13458474 Glycine max
Glyma.12G122900 0.5kb upstream 0.5kb upstream 500 false Chr12: 13453868-13454367 Glycine max
Glyma.12G122900 0.5kb downstream 0.5kb downstream 4607 true Chr12: 13454368-13458974 Glycine max
Glyma.12G122900 0.5kb downstream 0.5kb downstream 500 false Chr12: 13458475-13458974 Glycine max
Glyma.12G122900 1.0kb upstream 1.0kb upstream 5107 true Chr12: 13453368-13458474 Glycine max
Glyma.12G122900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 13453368-13454367 Glycine max
Glyma.12G122900 1.0kb downstream 1.0kb downstream 5107 true Chr12: 13454368-13459474 Glycine max
Glyma.12G122900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 13458475-13459474 Glycine max
Glyma.12G122900 2.0kb upstream 2.0kb upstream 6107 true Chr12: 13452368-13458474 Glycine max
Glyma.12G122900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 13452368-13454367 Glycine max
Glyma.12G122900 2.0kb downstream 2.0kb downstream 6107 true Chr12: 13454368-13460474 Glycine max
Glyma.12G122900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 13458475-13460474 Glycine max
Glyma.12G122900 5.0kb upstream 5.0kb upstream 9107 true Chr12: 13449368-13458474 Glycine max
Glyma.12G122900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 13449368-13454367 Glycine max
Glyma.12G122900 5.0kb downstream 5.0kb downstream 9107 true Chr12: 13454368-13463474 Glycine max
Glyma.12G122900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 13458475-13463474 Glycine max
Glyma.12G122900 10.0kb upstream 10.0kb upstream 14107 true Chr12: 13444368-13458474 Glycine max
Glyma.12G122900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 13444368-13454367 Glycine max
Glyma.12G122900 10.0kb downstream 10.0kb downstream 14107 true Chr12: 13454368-13468474 Glycine max
Glyma.12G122900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 13458475-13468474 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254657 5265 Fabidae View MSA
124060504 5270 Rosid View MSA
123749649 5271 Pentapetalae View MSA
122794973 5272 Eudicot View MSA
122043531 5273 Angiosperm View MSA
121344443 5274 Embryophyte View MSA
123428276 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.0258 0.0 114.886 High  
cufflinks 57.9638 0.0 277.701 High  
cufflinks 59.5105 0.0 284.198 High  
cufflinks 173.296 0.0 1209.16 High High
cufflinks 32.7229 0.0 138.945 High  
cufflinks 7.39694 0.0 23.2162   Low
cufflinks 138.717 0.0 871.944 High High
cufflinks 31.546 0.0 131.919 High  
cufflinks 32.8127 0.0 138.537 High  
cufflinks 10.48     High  
cufflinks 2.157       Low
cufflinks 30.286     High  
cufflinks 3.897        
cufflinks 2.193       Low
cufflinks 14.668     High  
cufflinks 34.845     High High
cufflinks 2.367       Low
cufflinks 27.005     High  
cufflinks 17.498     High  
cufflinks 31.048     High  
cufflinks 2.625       Low
cufflinks 27.569     High  
cufflinks 27.471     High  
cufflinks 1.457       Low
cufflinks 36.029     High High
cufflinks 2.815        

0 Strain