Gene : Glyma.12G128100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31165:SF10 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Genomic Order:  1281
Name:  ? Glyma.12G128100 Secondary Identifier:  ? PAC:30546369
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G128100 0.5kb upstream 0.5kb upstream 4174 true Chr12: 14053397-14057570 Glycine max
Glyma.12G128100 0.5kb upstream 0.5kb upstream 500 false Chr12: 14053397-14053896 Glycine max
Glyma.12G128100 0.5kb downstream 0.5kb downstream 4174 true Chr12: 14053897-14058070 Glycine max
Glyma.12G128100 0.5kb downstream 0.5kb downstream 500 false Chr12: 14057571-14058070 Glycine max
Glyma.12G128100 1.0kb upstream 1.0kb upstream 4674 true Chr12: 14052897-14057570 Glycine max
Glyma.12G128100 1.0kb upstream 1.0kb upstream 1000 false Chr12: 14052897-14053896 Glycine max
Glyma.12G128100 1.0kb downstream 1.0kb downstream 4674 true Chr12: 14053897-14058570 Glycine max
Glyma.12G128100 1.0kb downstream 1.0kb downstream 1000 false Chr12: 14057571-14058570 Glycine max
Glyma.12G128100 2.0kb upstream 2.0kb upstream 5674 true Chr12: 14051897-14057570 Glycine max
Glyma.12G128100 2.0kb upstream 2.0kb upstream 2000 false Chr12: 14051897-14053896 Glycine max
Glyma.12G128100 2.0kb downstream 2.0kb downstream 5674 true Chr12: 14053897-14059570 Glycine max
Glyma.12G128100 2.0kb downstream 2.0kb downstream 2000 false Chr12: 14057571-14059570 Glycine max
Glyma.12G128100 5.0kb upstream 5.0kb upstream 8674 true Chr12: 14048897-14057570 Glycine max
Glyma.12G128100 5.0kb upstream 5.0kb upstream 5000 false Chr12: 14048897-14053896 Glycine max
Glyma.12G128100 5.0kb downstream 5.0kb downstream 8674 true Chr12: 14053897-14062570 Glycine max
Glyma.12G128100 5.0kb downstream 5.0kb downstream 5000 false Chr12: 14057571-14062570 Glycine max
Glyma.12G128100 10.0kb upstream 10.0kb upstream 13674 true Chr12: 14043897-14057570 Glycine max
Glyma.12G128100 10.0kb upstream 10.0kb upstream 10000 false Chr12: 14043897-14053896 Glycine max
Glyma.12G128100 10.0kb downstream 10.0kb downstream 13674 true Chr12: 14053897-14067570 Glycine max
Glyma.12G128100 10.0kb downstream 10.0kb downstream 10000 false Chr12: 14057571-14067570 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792183 5273 Angiosperm View MSA
122309730 5265 Fabidae View MSA
124064953 5270 Rosid View MSA
123750207 5271 Pentapetalae View MSA
122796804 5272 Eudicot View MSA
121063429 5274 Embryophyte View MSA
123103178 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0441086 0.0 0.187968 Low Low
cufflinks 7.19905 0.0 21.4919    
cufflinks 1.01018 0.0 3.71048    
cufflinks 11.7144 0.0 32.8874    
cufflinks 1.65975 0.0 5.89317    
cufflinks 0.121733 0.0 0.488689 Low  
cufflinks 0.0766798 0.0 0.314545 Low Low
cufflinks 49.5877 0.0 133.695 High High
cufflinks 1.63028 0.0 5.80146    
cufflinks 8.589     High High
cufflinks 0.066        
cufflinks 0.177        
cufflinks 0.008     Low Low
cufflinks 0.071     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.116        
cufflinks 1.019       High
cufflinks 0.084     Low  
cufflinks 0.74       High
cufflinks 0.005     Low Low
cufflinks 0.134        
cufflinks 0.013     Low  
cufflinks 0.004     Low Low
cufflinks 0.058     Low  
cufflinks 0.049     Low  
cufflinks 0.078        

0 Strain