Gene : Glyma.12G116000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR15111 - RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3 Genomic Order:  1160
Name:  ? Glyma.12G116000 Secondary Identifier:  ? PAC:30548169
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G116000 0.5kb upstream 0.5kb upstream 7251 true Chr12: 11609351-11616601 Glycine max
Glyma.12G116000 0.5kb upstream 0.5kb upstream 500 false Chr12: 11616102-11616601 Glycine max
Glyma.12G116000 0.5kb downstream 0.5kb downstream 7251 true Chr12: 11608851-11616101 Glycine max
Glyma.12G116000 0.5kb downstream 0.5kb downstream 500 false Chr12: 11608851-11609350 Glycine max
Glyma.12G116000 1.0kb upstream 1.0kb upstream 7751 true Chr12: 11609351-11617101 Glycine max
Glyma.12G116000 1.0kb upstream 1.0kb upstream 1000 false Chr12: 11616102-11617101 Glycine max
Glyma.12G116000 1.0kb downstream 1.0kb downstream 7751 true Chr12: 11608351-11616101 Glycine max
Glyma.12G116000 1.0kb downstream 1.0kb downstream 1000 false Chr12: 11608351-11609350 Glycine max
Glyma.12G116000 2.0kb upstream 2.0kb upstream 8751 true Chr12: 11609351-11618101 Glycine max
Glyma.12G116000 2.0kb upstream 2.0kb upstream 2000 false Chr12: 11616102-11618101 Glycine max
Glyma.12G116000 2.0kb downstream 2.0kb downstream 8751 true Chr12: 11607351-11616101 Glycine max
Glyma.12G116000 2.0kb downstream 2.0kb downstream 2000 false Chr12: 11607351-11609350 Glycine max
Glyma.12G116000 5.0kb upstream 5.0kb upstream 11751 true Chr12: 11609351-11621101 Glycine max
Glyma.12G116000 5.0kb upstream 5.0kb upstream 5000 false Chr12: 11616102-11621101 Glycine max
Glyma.12G116000 5.0kb downstream 5.0kb downstream 11751 true Chr12: 11604351-11616101 Glycine max
Glyma.12G116000 5.0kb downstream 5.0kb downstream 5000 false Chr12: 11604351-11609350 Glycine max
Glyma.12G116000 10.0kb upstream 10.0kb upstream 16751 true Chr12: 11609351-11626101 Glycine max
Glyma.12G116000 10.0kb upstream 10.0kb upstream 10000 false Chr12: 11616102-11626101 Glycine max
Glyma.12G116000 10.0kb downstream 10.0kb downstream 16751 true Chr12: 11599351-11616101 Glycine max
Glyma.12G116000 10.0kb downstream 10.0kb downstream 10000 false Chr12: 11599351-11609350 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041391 5273 Angiosperm View MSA
122302090 5265 Fabidae View MSA
124060568 5270 Rosid View MSA
123741062 5271 Pentapetalae View MSA
122788086 5272 Eudicot View MSA
121345968 5274 Embryophyte View MSA
123425658 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.51933 0.0 19.5316   Low
cufflinks 7.66802 0.0 28.3403    
cufflinks 2.99442 0.0 14.5961   Low
cufflinks 8.33736 0.0 30.2372    
cufflinks 7.95691 0.0 29.1792    
cufflinks 6.60953 0.0 25.3088    
cufflinks 9.07919 0.0 36.5045    
cufflinks 6.00193 0.0 23.3991    
cufflinks 9.39627 0.0 33.4787    
cufflinks 0.5        
cufflinks 0.493       Low
cufflinks 0.566        
cufflinks 0.805       High
cufflinks 1.028       High
cufflinks 0.784       High
cufflinks 0.59        
cufflinks 0.498        
cufflinks 0.617        
cufflinks 0.721        
cufflinks 0.511        
cufflinks 0.633        
cufflinks 0.559        
cufflinks 0.665        
cufflinks 0.567        
cufflinks 0.527        
cufflinks 0.513        

0 Strain