Gene : Glyma.12G172200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13027 - SAND PROTEIN-RELATED Genomic Order:  1722
Name:  ? Glyma.12G172200 Secondary Identifier:  ? PAC:30545499
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G172200 0.5kb upstream 0.5kb upstream 6279 true Chr12: 32851496-32857774 Glycine max
Glyma.12G172200 0.5kb upstream 0.5kb upstream 500 false Chr12: 32857275-32857774 Glycine max
Glyma.12G172200 0.5kb downstream 0.5kb downstream 6279 true Chr12: 32850996-32857274 Glycine max
Glyma.12G172200 0.5kb downstream 0.5kb downstream 500 false Chr12: 32850996-32851495 Glycine max
Glyma.12G172200 1.0kb upstream 1.0kb upstream 6779 true Chr12: 32851496-32858274 Glycine max
Glyma.12G172200 1.0kb upstream 1.0kb upstream 1000 false Chr12: 32857275-32858274 Glycine max
Glyma.12G172200 1.0kb downstream 1.0kb downstream 6779 true Chr12: 32850496-32857274 Glycine max
Glyma.12G172200 1.0kb downstream 1.0kb downstream 1000 false Chr12: 32850496-32851495 Glycine max
Glyma.12G172200 2.0kb upstream 2.0kb upstream 7779 true Chr12: 32851496-32859274 Glycine max
Glyma.12G172200 2.0kb upstream 2.0kb upstream 2000 false Chr12: 32857275-32859274 Glycine max
Glyma.12G172200 2.0kb downstream 2.0kb downstream 7779 true Chr12: 32849496-32857274 Glycine max
Glyma.12G172200 2.0kb downstream 2.0kb downstream 2000 false Chr12: 32849496-32851495 Glycine max
Glyma.12G172200 5.0kb upstream 5.0kb upstream 10779 true Chr12: 32851496-32862274 Glycine max
Glyma.12G172200 5.0kb upstream 5.0kb upstream 5000 false Chr12: 32857275-32862274 Glycine max
Glyma.12G172200 5.0kb downstream 5.0kb downstream 10779 true Chr12: 32846496-32857274 Glycine max
Glyma.12G172200 5.0kb downstream 5.0kb downstream 5000 false Chr12: 32846496-32851495 Glycine max
Glyma.12G172200 10.0kb upstream 10.0kb upstream 15779 true Chr12: 32851496-32867274 Glycine max
Glyma.12G172200 10.0kb upstream 10.0kb upstream 10000 false Chr12: 32857275-32867274 Glycine max
Glyma.12G172200 10.0kb downstream 10.0kb downstream 15779 true Chr12: 32841496-32857274 Glycine max
Glyma.12G172200 10.0kb downstream 10.0kb downstream 10000 false Chr12: 32841496-32851495 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310936 5265 Fabidae View MSA
124066322 5270 Rosid View MSA
123753489 5271 Pentapetalae View MSA
122789295 5272 Eudicot View MSA
122043673 5273 Angiosperm View MSA
121344284 5274 Embryophyte View MSA
123428228 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.91984 0.0 27.0556   Low
cufflinks 6.51411 0.0 30.9487    
cufflinks 7.06433 0.0 29.3365    
cufflinks 8.41538 0.0 37.8893   High
cufflinks 7.16623 0.0 30.5744    
cufflinks 5.76802 0.0 22.186   Low
cufflinks 7.25148 0.0 31.5705    
cufflinks 6.63908 0.0 27.7952    
cufflinks 6.47492 0.0 27.5734    
cufflinks 0.572        
cufflinks 0.25       Low
cufflinks 0.529        
cufflinks 0.584        
cufflinks 0.66        
cufflinks 0.367        
cufflinks 0.761        
cufflinks 0.234       Low
cufflinks 0.66        
cufflinks 0.734        
cufflinks 1.018       High
cufflinks 0.289       Low
cufflinks 0.861       High
cufflinks 0.618        
cufflinks 0.32       Low
cufflinks 0.864       High
cufflinks 0.373        

0 Strain