Gene : Glyma.12G173600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR24347:SF1 - PROTEIN CKK-1, ISOFORM B Genomic Order:  1736
Name:  ? Glyma.12G173600 Secondary Identifier:  ? PAC:30547279
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G173600 0.5kb upstream 0.5kb upstream 7103 true Chr12: 33039481-33046583 Glycine max
Glyma.12G173600 0.5kb upstream 0.5kb upstream 500 false Chr12: 33046084-33046583 Glycine max
Glyma.12G173600 0.5kb downstream 0.5kb downstream 7103 true Chr12: 33038981-33046083 Glycine max
Glyma.12G173600 0.5kb downstream 0.5kb downstream 500 false Chr12: 33038981-33039480 Glycine max
Glyma.12G173600 1.0kb upstream 1.0kb upstream 7603 true Chr12: 33039481-33047083 Glycine max
Glyma.12G173600 1.0kb upstream 1.0kb upstream 1000 false Chr12: 33046084-33047083 Glycine max
Glyma.12G173600 1.0kb downstream 1.0kb downstream 7603 true Chr12: 33038481-33046083 Glycine max
Glyma.12G173600 1.0kb downstream 1.0kb downstream 1000 false Chr12: 33038481-33039480 Glycine max
Glyma.12G173600 2.0kb upstream 2.0kb upstream 8603 true Chr12: 33039481-33048083 Glycine max
Glyma.12G173600 2.0kb upstream 2.0kb upstream 2000 false Chr12: 33046084-33048083 Glycine max
Glyma.12G173600 2.0kb downstream 2.0kb downstream 8603 true Chr12: 33037481-33046083 Glycine max
Glyma.12G173600 2.0kb downstream 2.0kb downstream 2000 false Chr12: 33037481-33039480 Glycine max
Glyma.12G173600 5.0kb upstream 5.0kb upstream 11603 true Chr12: 33039481-33051083 Glycine max
Glyma.12G173600 5.0kb upstream 5.0kb upstream 5000 false Chr12: 33046084-33051083 Glycine max
Glyma.12G173600 5.0kb downstream 5.0kb downstream 11603 true Chr12: 33034481-33046083 Glycine max
Glyma.12G173600 5.0kb downstream 5.0kb downstream 5000 false Chr12: 33034481-33039480 Glycine max
Glyma.12G173600 10.0kb upstream 10.0kb upstream 16603 true Chr12: 33039481-33056083 Glycine max
Glyma.12G173600 10.0kb upstream 10.0kb upstream 10000 false Chr12: 33046084-33056083 Glycine max
Glyma.12G173600 10.0kb downstream 10.0kb downstream 16603 true Chr12: 33029481-33046083 Glycine max
Glyma.12G173600 10.0kb downstream 10.0kb downstream 10000 false Chr12: 33029481-33039480 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309675 5265 Fabidae View MSA
124062424 5270 Rosid View MSA
123753521 5271 Pentapetalae View MSA
122797928 5272 Eudicot View MSA
122051434 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.27087 0.0 19.7151    
cufflinks 7.74875 0.0 20.9368    
cufflinks 11.1802 0.0 29.8438   High
cufflinks 9.75705 0.0 26.1241    
cufflinks 7.14909 0.0 19.4038    
cufflinks 7.10731 0.0 19.2834    
cufflinks 12.1421 0.0 32.4019   High
cufflinks 7.18103 0.0 19.4857    
cufflinks 5.99745 0.0 16.4564   Low
cufflinks 4.292        
cufflinks 2.839       Low
cufflinks 4.724        
cufflinks 4.238        
cufflinks 4.499        
cufflinks 1.784       Low
cufflinks 6.131       High
cufflinks 3.8        
cufflinks 5.163        
cufflinks 5.911       High
cufflinks 5.657        
cufflinks 3.08        
cufflinks 5.653        
cufflinks 4.878        
cufflinks 2.823       Low
cufflinks 4.769        
cufflinks 3.465        

0 Strain