Gene : Glyma.12G165300 G. max Wm82.a2.v1
Defline:  (1 of 8) KOG0084 - GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins Genomic Order:  1653
Name:  ? Glyma.12G165300 Secondary Identifier:  ? PAC:30548176
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G165300 0.5kb upstream 0.5kb upstream 3114 true Chr12: 31949867-31952980 Glycine max
Glyma.12G165300 0.5kb upstream 0.5kb upstream 500 false Chr12: 31949867-31950366 Glycine max
Glyma.12G165300 0.5kb downstream 0.5kb downstream 3114 true Chr12: 31950367-31953480 Glycine max
Glyma.12G165300 0.5kb downstream 0.5kb downstream 500 false Chr12: 31952981-31953480 Glycine max
Glyma.12G165300 1.0kb upstream 1.0kb upstream 3614 true Chr12: 31949367-31952980 Glycine max
Glyma.12G165300 1.0kb upstream 1.0kb upstream 1000 false Chr12: 31949367-31950366 Glycine max
Glyma.12G165300 1.0kb downstream 1.0kb downstream 3614 true Chr12: 31950367-31953980 Glycine max
Glyma.12G165300 1.0kb downstream 1.0kb downstream 1000 false Chr12: 31952981-31953980 Glycine max
Glyma.12G165300 2.0kb upstream 2.0kb upstream 4614 true Chr12: 31948367-31952980 Glycine max
Glyma.12G165300 2.0kb upstream 2.0kb upstream 2000 false Chr12: 31948367-31950366 Glycine max
Glyma.12G165300 2.0kb downstream 2.0kb downstream 4614 true Chr12: 31950367-31954980 Glycine max
Glyma.12G165300 2.0kb downstream 2.0kb downstream 2000 false Chr12: 31952981-31954980 Glycine max
Glyma.12G165300 5.0kb upstream 5.0kb upstream 7614 true Chr12: 31945367-31952980 Glycine max
Glyma.12G165300 5.0kb upstream 5.0kb upstream 5000 false Chr12: 31945367-31950366 Glycine max
Glyma.12G165300 5.0kb downstream 5.0kb downstream 7614 true Chr12: 31950367-31957980 Glycine max
Glyma.12G165300 5.0kb downstream 5.0kb downstream 5000 false Chr12: 31952981-31957980 Glycine max
Glyma.12G165300 10.0kb upstream 10.0kb upstream 12614 true Chr12: 31940367-31952980 Glycine max
Glyma.12G165300 10.0kb upstream 10.0kb upstream 10000 false Chr12: 31940367-31950366 Glycine max
Glyma.12G165300 10.0kb downstream 10.0kb downstream 12614 true Chr12: 31950367-31962980 Glycine max
Glyma.12G165300 10.0kb downstream 10.0kb downstream 10000 false Chr12: 31952981-31962980 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307543 5265 Fabidae View MSA
124069076 5270 Rosid View MSA
123751824 5271 Pentapetalae View MSA
122790166 5272 Eudicot View MSA
122051400 5273 Angiosperm View MSA
121350724 5274 Embryophyte View MSA
123381858 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.624 0.0 59.4066    
cufflinks 16.2399 0.0 63.7276    
cufflinks 11.1126 0.0 45.4473   Low
cufflinks 23.2525 0.0 87.4426 High  
cufflinks 27.7685 0.0 104.535 High  
cufflinks 11.9447 0.0 48.6795   Low
cufflinks 48.853 0.0 189.038 High High
cufflinks 21.5305 0.0 81.7529 High  
cufflinks 42.479 0.0 163.53 High High
cufflinks 1.965        
cufflinks 0.517       Low
cufflinks 2.188        
cufflinks 2.065        
cufflinks 2.568        
cufflinks 4.518       High
cufflinks 1.506        
cufflinks 1.022        
cufflinks 2.708        
cufflinks 2.361        
cufflinks 1.607        
cufflinks 0.662       Low
cufflinks 1.752        
cufflinks 1.609        
cufflinks 0.623       Low
cufflinks 1.636        
cufflinks 0.926        

0 Strain