Gene : Glyma.12G158900 G. max Wm82.a2.v1
Defline:  (1 of 7) PTHR31072:SF3 - TRANSCRIPTION FACTOR TCP10-RELATED Genomic Order:  1589
Name:  ? Glyma.12G158900 Secondary Identifier:  ? PAC:30548683
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G158900 0.5kb upstream 0.5kb upstream 3366 true Chr12: 26907587-26910952 Glycine max
Glyma.12G158900 0.5kb upstream 0.5kb upstream 500 false Chr12: 26910453-26910952 Glycine max
Glyma.12G158900 0.5kb downstream 0.5kb downstream 3366 true Chr12: 26907087-26910452 Glycine max
Glyma.12G158900 0.5kb downstream 0.5kb downstream 500 false Chr12: 26907087-26907586 Glycine max
Glyma.12G158900 1.0kb upstream 1.0kb upstream 3866 true Chr12: 26907587-26911452 Glycine max
Glyma.12G158900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 26910453-26911452 Glycine max
Glyma.12G158900 1.0kb downstream 1.0kb downstream 3866 true Chr12: 26906587-26910452 Glycine max
Glyma.12G158900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 26906587-26907586 Glycine max
Glyma.12G158900 2.0kb upstream 2.0kb upstream 4866 true Chr12: 26907587-26912452 Glycine max
Glyma.12G158900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 26910453-26912452 Glycine max
Glyma.12G158900 2.0kb downstream 2.0kb downstream 4866 true Chr12: 26905587-26910452 Glycine max
Glyma.12G158900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 26905587-26907586 Glycine max
Glyma.12G158900 5.0kb upstream 5.0kb upstream 7866 true Chr12: 26907587-26915452 Glycine max
Glyma.12G158900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 26910453-26915452 Glycine max
Glyma.12G158900 5.0kb downstream 5.0kb downstream 7866 true Chr12: 26902587-26910452 Glycine max
Glyma.12G158900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 26902587-26907586 Glycine max
Glyma.12G158900 10.0kb upstream 10.0kb upstream 12866 true Chr12: 26907587-26920452 Glycine max
Glyma.12G158900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 26910453-26920452 Glycine max
Glyma.12G158900 10.0kb downstream 10.0kb downstream 12866 true Chr12: 26897587-26910452 Glycine max
Glyma.12G158900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 26897587-26907586 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304327 5265 Fabidae View MSA
124070231 5270 Rosid View MSA
123742325 5271 Pentapetalae View MSA
122789743 5272 Eudicot View MSA
122046366 5273 Angiosperm View MSA
121350950 5274 Embryophyte View MSA
123381946 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.34372 0.0 14.5965    
cufflinks 6.55857 0.0 17.7372   High
cufflinks 0.387648 0.0 1.41539   Low
cufflinks 3.22842 0.0 9.26076    
cufflinks 0.65089 0.0 2.27684    
cufflinks 0.533196 0.0 1.89821    
cufflinks 12.9618 0.0 34.6654   High
cufflinks 0.292584 0.0 1.0823   Low
cufflinks 1.44505 0.0 4.62251    
cufflinks 0.225       Low
cufflinks 0.235       Low
cufflinks 3.184        
cufflinks 2.589        
cufflinks 1.056        
cufflinks 0.177       Low
cufflinks 7.677     High  
cufflinks 0.231       Low
cufflinks 16.463     High High
cufflinks 4.195        
cufflinks 9.145     High  
cufflinks 0.215       Low
cufflinks 12.308     High High
cufflinks 14.555     High High
cufflinks 0.216       Low
cufflinks 8.386     High  
cufflinks 0.276        

0 Strain