Gene : Glyma.12G162700 G. max Wm82.a2.v1
Defline:  (1 of 354) PF00847 - AP2 domain (AP2) Genomic Order:  1627
Name:  ? Glyma.12G162700 Secondary Identifier:  ? PAC:30545428
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G162700 0.5kb upstream 0.5kb upstream 1068 true Chr12: 30868757-30869824 Glycine max
Glyma.12G162700 0.5kb upstream 0.5kb upstream 500 false Chr12: 30868757-30869256 Glycine max
Glyma.12G162700 0.5kb downstream 0.5kb downstream 1068 true Chr12: 30869257-30870324 Glycine max
Glyma.12G162700 0.5kb downstream 0.5kb downstream 500 false Chr12: 30869825-30870324 Glycine max
Glyma.12G162700 1.0kb upstream 1.0kb upstream 1568 true Chr12: 30868257-30869824 Glycine max
Glyma.12G162700 1.0kb upstream 1.0kb upstream 1000 false Chr12: 30868257-30869256 Glycine max
Glyma.12G162700 1.0kb downstream 1.0kb downstream 1568 true Chr12: 30869257-30870824 Glycine max
Glyma.12G162700 1.0kb downstream 1.0kb downstream 1000 false Chr12: 30869825-30870824 Glycine max
Glyma.12G162700 2.0kb upstream 2.0kb upstream 2568 true Chr12: 30867257-30869824 Glycine max
Glyma.12G162700 2.0kb upstream 2.0kb upstream 2000 false Chr12: 30867257-30869256 Glycine max
Glyma.12G162700 2.0kb downstream 2.0kb downstream 2568 true Chr12: 30869257-30871824 Glycine max
Glyma.12G162700 2.0kb downstream 2.0kb downstream 2000 false Chr12: 30869825-30871824 Glycine max
Glyma.12G162700 5.0kb upstream 5.0kb upstream 5568 true Chr12: 30864257-30869824 Glycine max
Glyma.12G162700 5.0kb upstream 5.0kb upstream 5000 false Chr12: 30864257-30869256 Glycine max
Glyma.12G162700 5.0kb downstream 5.0kb downstream 5568 true Chr12: 30869257-30874824 Glycine max
Glyma.12G162700 5.0kb downstream 5.0kb downstream 5000 false Chr12: 30869825-30874824 Glycine max
Glyma.12G162700 10.0kb upstream 10.0kb upstream 10568 true Chr12: 30859257-30869824 Glycine max
Glyma.12G162700 10.0kb upstream 10.0kb upstream 10000 false Chr12: 30859257-30869256 Glycine max
Glyma.12G162700 10.0kb downstream 10.0kb downstream 10568 true Chr12: 30869257-30879824 Glycine max
Glyma.12G162700 10.0kb downstream 10.0kb downstream 10000 false Chr12: 30869825-30879824 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122244949 5265 Fabidae Singleton cluster - no MSA
124073899 5270 Rosid View MSA
123750459 5271 Pentapetalae View MSA
122795578 5272 Eudicot View MSA
122049614 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.05561 0.0 14.8368    
cufflinks 4.92712 0.0 17.876    
cufflinks 3.87427 0.0 14.3205    
cufflinks 7.11358 0.0 25.1106   High
cufflinks 4.14253 0.0 15.0071    
cufflinks 2.26902 0.0 8.53858    
cufflinks 1.71732 0.0 6.53262   Low
cufflinks 4.09495 0.0 15.0229    
cufflinks 2.24902 0.0 8.4767    
cufflinks 7.892     High  
cufflinks 5.56     High  
cufflinks 10.29     High High
cufflinks 3.057        
cufflinks 1.091       Low
cufflinks 6.017     High  
cufflinks 8.236     High  
cufflinks 10.49     High High
cufflinks 11.327     High High
cufflinks 6.267        
cufflinks 4.308        
cufflinks 3.195        
cufflinks 4.272        
cufflinks 3.815        
cufflinks 3.035        
cufflinks 2.299       Low
cufflinks 4.221        

0 Strain