Gene : Glyma.12G180400 G. max Wm82.a2.v1
Defline:  (1 of 77) PF03000 - NPH3 family (NPH3) Genomic Order:  1804
Name:  ? Glyma.12G180400 Secondary Identifier:  ? PAC:30548977
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G180400 0.5kb upstream 0.5kb upstream 4644 true Chr12: 34076499-34081142 Glycine max
Glyma.12G180400 0.5kb upstream 0.5kb upstream 500 false Chr12: 34076499-34076998 Glycine max
Glyma.12G180400 0.5kb downstream 0.5kb downstream 4644 true Chr12: 34076999-34081642 Glycine max
Glyma.12G180400 0.5kb downstream 0.5kb downstream 500 false Chr12: 34081143-34081642 Glycine max
Glyma.12G180400 1.0kb upstream 1.0kb upstream 5144 true Chr12: 34075999-34081142 Glycine max
Glyma.12G180400 1.0kb upstream 1.0kb upstream 1000 false Chr12: 34075999-34076998 Glycine max
Glyma.12G180400 1.0kb downstream 1.0kb downstream 5144 true Chr12: 34076999-34082142 Glycine max
Glyma.12G180400 1.0kb downstream 1.0kb downstream 1000 false Chr12: 34081143-34082142 Glycine max
Glyma.12G180400 2.0kb upstream 2.0kb upstream 6144 true Chr12: 34074999-34081142 Glycine max
Glyma.12G180400 2.0kb upstream 2.0kb upstream 2000 false Chr12: 34074999-34076998 Glycine max
Glyma.12G180400 2.0kb downstream 2.0kb downstream 6144 true Chr12: 34076999-34083142 Glycine max
Glyma.12G180400 2.0kb downstream 2.0kb downstream 2000 false Chr12: 34081143-34083142 Glycine max
Glyma.12G180400 5.0kb upstream 5.0kb upstream 9144 true Chr12: 34071999-34081142 Glycine max
Glyma.12G180400 5.0kb upstream 5.0kb upstream 5000 false Chr12: 34071999-34076998 Glycine max
Glyma.12G180400 5.0kb downstream 5.0kb downstream 9144 true Chr12: 34076999-34086142 Glycine max
Glyma.12G180400 5.0kb downstream 5.0kb downstream 5000 false Chr12: 34081143-34086142 Glycine max
Glyma.12G180400 10.0kb upstream 10.0kb upstream 14144 true Chr12: 34066999-34081142 Glycine max
Glyma.12G180400 10.0kb upstream 10.0kb upstream 10000 false Chr12: 34066999-34076998 Glycine max
Glyma.12G180400 10.0kb downstream 10.0kb downstream 14144 true Chr12: 34076999-34091142 Glycine max
Glyma.12G180400 10.0kb downstream 10.0kb downstream 10000 false Chr12: 34081143-34091142 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306491 5265 Fabidae View MSA
124061696 5270 Rosid View MSA
123736594 5271 Pentapetalae View MSA
122785807 5272 Eudicot View MSA
122045563 5273 Angiosperm View MSA
121310465 5274 Embryophyte View MSA
123347939 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.18937 0.0 19.4033   High
cufflinks 5.89929 0.0 16.0985    
cufflinks 3.43413 0.0 9.83646    
cufflinks 2.22135 0.0 6.74902   Low
cufflinks 4.11412 0.0 11.592    
cufflinks 4.73085 0.0 13.1257    
cufflinks 2.25849 0.0 6.8762   Low
cufflinks 5.92241 0.0 16.1486    
cufflinks 3.12348 0.0 9.07334    
cufflinks 9.547     High High
cufflinks 4.363        
cufflinks 2.355       Low
cufflinks 3.793        
cufflinks 2.502       Low
cufflinks 3.063        
cufflinks 6.468        
cufflinks 4.074        
cufflinks 2.307       Low
cufflinks 5.468        
cufflinks 7.036     High  
cufflinks 6.344     High  
cufflinks 7.017        
cufflinks 6.205        
cufflinks 3.558        
cufflinks 6.582        
cufflinks 5.934        

0 Strain