Gene : Glyma.12G228300 G. max Wm82.a2.v1
Defline:  (1 of 7) PTHR31072:SF3 - TRANSCRIPTION FACTOR TCP10-RELATED Genomic Order:  2283
Name:  ? Glyma.12G228300 Secondary Identifier:  ? PAC:30546648
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G228300 0.5kb upstream 0.5kb upstream 3211 true Chr12: 38813527-38816737 Glycine max
Glyma.12G228300 0.5kb upstream 0.5kb upstream 500 false Chr12: 38816238-38816737 Glycine max
Glyma.12G228300 0.5kb downstream 0.5kb downstream 3211 true Chr12: 38813027-38816237 Glycine max
Glyma.12G228300 0.5kb downstream 0.5kb downstream 500 false Chr12: 38813027-38813526 Glycine max
Glyma.12G228300 1.0kb upstream 1.0kb upstream 3711 true Chr12: 38813527-38817237 Glycine max
Glyma.12G228300 1.0kb upstream 1.0kb upstream 1000 false Chr12: 38816238-38817237 Glycine max
Glyma.12G228300 1.0kb downstream 1.0kb downstream 3711 true Chr12: 38812527-38816237 Glycine max
Glyma.12G228300 1.0kb downstream 1.0kb downstream 1000 false Chr12: 38812527-38813526 Glycine max
Glyma.12G228300 2.0kb upstream 2.0kb upstream 4711 true Chr12: 38813527-38818237 Glycine max
Glyma.12G228300 2.0kb upstream 2.0kb upstream 2000 false Chr12: 38816238-38818237 Glycine max
Glyma.12G228300 2.0kb downstream 2.0kb downstream 4711 true Chr12: 38811527-38816237 Glycine max
Glyma.12G228300 2.0kb downstream 2.0kb downstream 2000 false Chr12: 38811527-38813526 Glycine max
Glyma.12G228300 5.0kb upstream 5.0kb upstream 7711 true Chr12: 38813527-38821237 Glycine max
Glyma.12G228300 5.0kb upstream 5.0kb upstream 5000 false Chr12: 38816238-38821237 Glycine max
Glyma.12G228300 5.0kb downstream 5.0kb downstream 7711 true Chr12: 38808527-38816237 Glycine max
Glyma.12G228300 5.0kb downstream 5.0kb downstream 5000 false Chr12: 38808527-38813526 Glycine max
Glyma.12G228300 10.0kb upstream 10.0kb upstream 12711 true Chr12: 38813527-38826237 Glycine max
Glyma.12G228300 10.0kb upstream 10.0kb upstream 10000 false Chr12: 38816238-38826237 Glycine max
Glyma.12G228300 10.0kb downstream 10.0kb downstream 12711 true Chr12: 38803527-38816237 Glycine max
Glyma.12G228300 10.0kb downstream 10.0kb downstream 10000 false Chr12: 38803527-38813526 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254749 5265 Fabidae View MSA
124070231 5270 Rosid View MSA
123742325 5271 Pentapetalae View MSA
122789743 5272 Eudicot View MSA
122046366 5273 Angiosperm View MSA
121350950 5274 Embryophyte View MSA
123381946 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.3552 0.0 41.1793   High
cufflinks 6.99842 0.0 18.9067    
cufflinks 1.47478 0.0 4.76322   Low
cufflinks 11.7836 0.0 31.4398    
cufflinks 2.32277 0.0 6.97351    
cufflinks 3.31767 0.0 9.529    
cufflinks 22.1037 0.0 60.5173 High High
cufflinks 1.41925 0.0 4.59459   Low
cufflinks 3.9231 0.0 11.07    
cufflinks 1.047        
cufflinks 0.248       Low
cufflinks 3.779        
cufflinks 4.925        
cufflinks 2.16        
cufflinks 0.161       Low
cufflinks 30.665     High High
cufflinks 1.243        
cufflinks 10.004     High  
cufflinks 7.767     High  
cufflinks 37.883     High High
cufflinks 0.333       Low
cufflinks 35.909     High High
cufflinks 35.722     High High
cufflinks 0.496        
cufflinks 29.286     High High
cufflinks 0.679        

0 Strain