Gene : Glyma.12G230900 G. max Wm82.a2.v1
Defline:  (1 of 4) PF10559 - Plug domain of Sec61p (Plug_translocon) Genomic Order:  2309
Name:  ? Glyma.12G230900 Secondary Identifier:  ? PAC:30545879
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G230900 0.5kb upstream 0.5kb upstream 4855 true Chr12: 39083512-39088366 Glycine max
Glyma.12G230900 0.5kb upstream 0.5kb upstream 500 false Chr12: 39087867-39088366 Glycine max
Glyma.12G230900 0.5kb downstream 0.5kb downstream 4855 true Chr12: 39083012-39087866 Glycine max
Glyma.12G230900 0.5kb downstream 0.5kb downstream 500 false Chr12: 39083012-39083511 Glycine max
Glyma.12G230900 1.0kb upstream 1.0kb upstream 5355 true Chr12: 39083512-39088866 Glycine max
Glyma.12G230900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 39087867-39088866 Glycine max
Glyma.12G230900 1.0kb downstream 1.0kb downstream 5355 true Chr12: 39082512-39087866 Glycine max
Glyma.12G230900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 39082512-39083511 Glycine max
Glyma.12G230900 2.0kb upstream 2.0kb upstream 6355 true Chr12: 39083512-39089866 Glycine max
Glyma.12G230900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 39087867-39089866 Glycine max
Glyma.12G230900 2.0kb downstream 2.0kb downstream 6355 true Chr12: 39081512-39087866 Glycine max
Glyma.12G230900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 39081512-39083511 Glycine max
Glyma.12G230900 5.0kb upstream 5.0kb upstream 9355 true Chr12: 39083512-39092866 Glycine max
Glyma.12G230900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 39087867-39092866 Glycine max
Glyma.12G230900 5.0kb downstream 5.0kb downstream 9355 true Chr12: 39078512-39087866 Glycine max
Glyma.12G230900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 39078512-39083511 Glycine max
Glyma.12G230900 10.0kb upstream 10.0kb upstream 14355 true Chr12: 39083512-39097866 Glycine max
Glyma.12G230900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 39087867-39097866 Glycine max
Glyma.12G230900 10.0kb downstream 10.0kb downstream 14355 true Chr12: 39073512-39087866 Glycine max
Glyma.12G230900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 39073512-39083511 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303091 5265 Fabidae View MSA
124061120 5270 Rosid View MSA
123743159 5271 Pentapetalae View MSA
122792380 5272 Eudicot View MSA
122043956 5273 Angiosperm View MSA
121349680 5274 Embryophyte View MSA
123426638 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 86.2547 0.0 266.313 High  
cufflinks 63.9367 0.0 188.359 High  
cufflinks 53.8381 0.0 155.542 High Low
cufflinks 72.7108 0.0 218.464 High  
cufflinks 98.332 0.0 310.396 High  
cufflinks 99.7187 0.0 316.387 High  
cufflinks 146.92 0.0 503.941 High High
cufflinks 84.0825 0.0 258.598 High  
cufflinks 74.6842 0.0 225.374 High  
cufflinks 52.618     High  
cufflinks 31.902     High  
cufflinks 34.503     High  
cufflinks 63.637     High High
cufflinks 80.057     High High
cufflinks 18.41     High Low
cufflinks 32.26     High  
cufflinks 57.051     High High
cufflinks 43.09     High  
cufflinks 37.721     High  
cufflinks 25.201     High Low
cufflinks 38.831     High  
cufflinks 29.097     High  
cufflinks 40.711     High  
cufflinks 45.853     High  
cufflinks 25.557     High Low
cufflinks 45.23     High  

0 Strain