Gene : Glyma.12G220900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13251 - EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 Genomic Order:  2209
Name:  ? Glyma.12G220900 Secondary Identifier:  ? PAC:30545694
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G220900 0.5kb upstream 0.5kb upstream 13137 true Chr12: 38019715-38032851 Glycine max
Glyma.12G220900 0.5kb upstream 0.5kb upstream 500 false Chr12: 38032352-38032851 Glycine max
Glyma.12G220900 0.5kb downstream 0.5kb downstream 13137 true Chr12: 38019215-38032351 Glycine max
Glyma.12G220900 0.5kb downstream 0.5kb downstream 500 false Chr12: 38019215-38019714 Glycine max
Glyma.12G220900 1.0kb upstream 1.0kb upstream 13637 true Chr12: 38019715-38033351 Glycine max
Glyma.12G220900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 38032352-38033351 Glycine max
Glyma.12G220900 1.0kb downstream 1.0kb downstream 13637 true Chr12: 38018715-38032351 Glycine max
Glyma.12G220900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 38018715-38019714 Glycine max
Glyma.12G220900 2.0kb upstream 2.0kb upstream 14637 true Chr12: 38019715-38034351 Glycine max
Glyma.12G220900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 38032352-38034351 Glycine max
Glyma.12G220900 2.0kb downstream 2.0kb downstream 14637 true Chr12: 38017715-38032351 Glycine max
Glyma.12G220900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 38017715-38019714 Glycine max
Glyma.12G220900 5.0kb upstream 5.0kb upstream 17637 true Chr12: 38019715-38037351 Glycine max
Glyma.12G220900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 38032352-38037351 Glycine max
Glyma.12G220900 5.0kb downstream 5.0kb downstream 17637 true Chr12: 38014715-38032351 Glycine max
Glyma.12G220900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 38014715-38019714 Glycine max
Glyma.12G220900 10.0kb upstream 10.0kb upstream 22637 true Chr12: 38019715-38042351 Glycine max
Glyma.12G220900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 38032352-38042351 Glycine max
Glyma.12G220900 10.0kb downstream 10.0kb downstream 22637 true Chr12: 38009715-38032351 Glycine max
Glyma.12G220900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 38009715-38019714 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310428 5265 Fabidae View MSA
124063131 5270 Rosid View MSA
123747515 5271 Pentapetalae View MSA
122790738 5272 Eudicot View MSA
122046287 5273 Angiosperm View MSA
121348694 5274 Embryophyte View MSA
123380976 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.47148 0.0 19.0937   Low
cufflinks 10.0833 0.0 30.6611    
cufflinks 4.22358 0.0 15.2989   Low
cufflinks 12.4938 0.0 38.9826    
cufflinks 13.5941 0.0 50.0903   High
cufflinks 6.47957 0.0 22.5011    
cufflinks 11.0647 0.0 33.8905    
cufflinks 11.0423 0.0 39.5769    
cufflinks 9.40212 0.0 28.3871    
cufflinks 3.021       High
cufflinks 0.277       Low
cufflinks 1.453        
cufflinks 2.972       High
cufflinks 3.778       High
cufflinks 0.703        
cufflinks 1.342        
cufflinks 1.255        
cufflinks 2.37        
cufflinks 2.629        
cufflinks 1.331        
cufflinks 0.487       Low
cufflinks 1.516        
cufflinks 1.597        
cufflinks 0.299       Low
cufflinks 1.294        
cufflinks 1.058        

0 Strain