Gene : Glyma.12G225000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11229 - 50S RIBOSOMAL PROTEIN L3 Genomic Order:  2250
Name:  ? Glyma.12G225000 Secondary Identifier:  ? PAC:30547280
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G225000 0.5kb upstream 0.5kb upstream 4873 true Chr12: 38447981-38452853 Glycine max
Glyma.12G225000 0.5kb upstream 0.5kb upstream 500 false Chr12: 38452354-38452853 Glycine max
Glyma.12G225000 0.5kb downstream 0.5kb downstream 4873 true Chr12: 38447481-38452353 Glycine max
Glyma.12G225000 0.5kb downstream 0.5kb downstream 500 false Chr12: 38447481-38447980 Glycine max
Glyma.12G225000 1.0kb upstream 1.0kb upstream 5373 true Chr12: 38447981-38453353 Glycine max
Glyma.12G225000 1.0kb upstream 1.0kb upstream 1000 false Chr12: 38452354-38453353 Glycine max
Glyma.12G225000 1.0kb downstream 1.0kb downstream 5373 true Chr12: 38446981-38452353 Glycine max
Glyma.12G225000 1.0kb downstream 1.0kb downstream 1000 false Chr12: 38446981-38447980 Glycine max
Glyma.12G225000 2.0kb upstream 2.0kb upstream 6373 true Chr12: 38447981-38454353 Glycine max
Glyma.12G225000 2.0kb upstream 2.0kb upstream 2000 false Chr12: 38452354-38454353 Glycine max
Glyma.12G225000 2.0kb downstream 2.0kb downstream 6373 true Chr12: 38445981-38452353 Glycine max
Glyma.12G225000 2.0kb downstream 2.0kb downstream 2000 false Chr12: 38445981-38447980 Glycine max
Glyma.12G225000 5.0kb upstream 5.0kb upstream 9373 true Chr12: 38447981-38457353 Glycine max
Glyma.12G225000 5.0kb upstream 5.0kb upstream 5000 false Chr12: 38452354-38457353 Glycine max
Glyma.12G225000 5.0kb downstream 5.0kb downstream 9373 true Chr12: 38442981-38452353 Glycine max
Glyma.12G225000 5.0kb downstream 5.0kb downstream 5000 false Chr12: 38442981-38447980 Glycine max
Glyma.12G225000 10.0kb upstream 10.0kb upstream 14373 true Chr12: 38447981-38462353 Glycine max
Glyma.12G225000 10.0kb upstream 10.0kb upstream 10000 false Chr12: 38452354-38462353 Glycine max
Glyma.12G225000 10.0kb downstream 10.0kb downstream 14373 true Chr12: 38437981-38452353 Glycine max
Glyma.12G225000 10.0kb downstream 10.0kb downstream 10000 false Chr12: 38437981-38447980 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041501 5273 Angiosperm View MSA
122305263 5265 Fabidae View MSA
124071228 5270 Rosid View MSA
123739154 5271 Pentapetalae View MSA
122789035 5272 Eudicot View MSA
121347550 5274 Embryophyte View MSA
123425117 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.30997 0.0 22.3686    
cufflinks 6.09826 0.0 21.9104    
cufflinks 2.00366 0.0 7.58921   Low
cufflinks 5.70479 0.0 24.5465    
cufflinks 12.2407 0.0 43.5006    
cufflinks 9.41177 0.0 35.4852    
cufflinks 9.85072 0.0 31.6222    
cufflinks 6.10833 0.0 25.5775    
cufflinks 14.0361 0.0 49.0608   High
cufflinks 0.812        
cufflinks 0.144       Low
cufflinks 0.759        
cufflinks 2.476       High
cufflinks 3.583       High
cufflinks 0.408        
cufflinks 0.54        
cufflinks 0.516        
cufflinks 0.823        
cufflinks 1.286        
cufflinks 0.284        
cufflinks 0.281        
cufflinks 0.368        
cufflinks 0.76        
cufflinks 0.22       Low
cufflinks 0.438        
cufflinks 0.528        

0 Strain