Gene : Glyma.12G227100 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR33785:SF1 - GENOMIC DNA, CHROMOSOME 3, BAC CLONE:F4B12 Genomic Order:  2271
Name:  ? Glyma.12G227100 Secondary Identifier:  ? PAC:30548579
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G227100 0.5kb upstream 0.5kb upstream 2378 true Chr12: 38701698-38704075 Glycine max
Glyma.12G227100 0.5kb upstream 0.5kb upstream 500 false Chr12: 38701698-38702197 Glycine max
Glyma.12G227100 0.5kb downstream 0.5kb downstream 2378 true Chr12: 38702198-38704575 Glycine max
Glyma.12G227100 0.5kb downstream 0.5kb downstream 500 false Chr12: 38704076-38704575 Glycine max
Glyma.12G227100 1.0kb upstream 1.0kb upstream 2878 true Chr12: 38701198-38704075 Glycine max
Glyma.12G227100 1.0kb upstream 1.0kb upstream 1000 false Chr12: 38701198-38702197 Glycine max
Glyma.12G227100 1.0kb downstream 1.0kb downstream 2878 true Chr12: 38702198-38705075 Glycine max
Glyma.12G227100 1.0kb downstream 1.0kb downstream 1000 false Chr12: 38704076-38705075 Glycine max
Glyma.12G227100 2.0kb upstream 2.0kb upstream 3878 true Chr12: 38700198-38704075 Glycine max
Glyma.12G227100 2.0kb upstream 2.0kb upstream 2000 false Chr12: 38700198-38702197 Glycine max
Glyma.12G227100 2.0kb downstream 2.0kb downstream 3878 true Chr12: 38702198-38706075 Glycine max
Glyma.12G227100 2.0kb downstream 2.0kb downstream 2000 false Chr12: 38704076-38706075 Glycine max
Glyma.12G227100 5.0kb upstream 5.0kb upstream 6878 true Chr12: 38697198-38704075 Glycine max
Glyma.12G227100 5.0kb upstream 5.0kb upstream 5000 false Chr12: 38697198-38702197 Glycine max
Glyma.12G227100 5.0kb downstream 5.0kb downstream 6878 true Chr12: 38702198-38709075 Glycine max
Glyma.12G227100 5.0kb downstream 5.0kb downstream 5000 false Chr12: 38704076-38709075 Glycine max
Glyma.12G227100 10.0kb upstream 10.0kb upstream 11878 true Chr12: 38692198-38704075 Glycine max
Glyma.12G227100 10.0kb upstream 10.0kb upstream 10000 false Chr12: 38692198-38702197 Glycine max
Glyma.12G227100 10.0kb downstream 10.0kb downstream 11878 true Chr12: 38702198-38714075 Glycine max
Glyma.12G227100 10.0kb downstream 10.0kb downstream 10000 false Chr12: 38704076-38714075 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301879 5265 Fabidae View MSA
124063782 5270 Rosid View MSA
123750914 5271 Pentapetalae View MSA
122795249 5272 Eudicot View MSA
122048968 5273 Angiosperm View MSA
121350568 5274 Embryophyte View MSA
123381799 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.57447 0.0 2.12765   Low
cufflinks 2.2407 0.0 7.42608    
cufflinks 0.905212 0.0 3.25728   Low
cufflinks 9.471 0.0 26.0722   High
cufflinks 6.43682 0.0 18.4706    
cufflinks 10.1421 0.0 27.8542   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.05065 0.0 9.63214    
cufflinks 5.37514 0.0 15.7503    
cufflinks 5.675        
cufflinks 0.591       Low
cufflinks 2.877        
cufflinks 7.864     High High
cufflinks 10.457     High High
cufflinks 0.202       Low
cufflinks 4.538        
cufflinks 0.467       Low
cufflinks 11.423     High High
cufflinks 1.338        
cufflinks 4.413        
cufflinks 0.757        
cufflinks 4.111        
cufflinks 3.81        
cufflinks 0.381       Low
cufflinks 3.962        
cufflinks 1.852        

0 Strain