Gene : Glyma.12G214200 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2142
Name:  ? Glyma.12G214200 Secondary Identifier:  ? PAC:30546207
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G214200 0.5kb upstream 0.5kb upstream 13057 true Chr12: 37350924-37363980 Glycine max
Glyma.12G214200 0.5kb upstream 0.5kb upstream 500 false Chr12: 37350924-37351423 Glycine max
Glyma.12G214200 0.5kb downstream 0.5kb downstream 13057 true Chr12: 37351424-37364480 Glycine max
Glyma.12G214200 0.5kb downstream 0.5kb downstream 500 false Chr12: 37363981-37364480 Glycine max
Glyma.12G214200 1.0kb upstream 1.0kb upstream 13557 true Chr12: 37350424-37363980 Glycine max
Glyma.12G214200 1.0kb upstream 1.0kb upstream 1000 false Chr12: 37350424-37351423 Glycine max
Glyma.12G214200 1.0kb downstream 1.0kb downstream 13557 true Chr12: 37351424-37364980 Glycine max
Glyma.12G214200 1.0kb downstream 1.0kb downstream 1000 false Chr12: 37363981-37364980 Glycine max
Glyma.12G214200 2.0kb upstream 2.0kb upstream 14557 true Chr12: 37349424-37363980 Glycine max
Glyma.12G214200 2.0kb upstream 2.0kb upstream 2000 false Chr12: 37349424-37351423 Glycine max
Glyma.12G214200 2.0kb downstream 2.0kb downstream 14557 true Chr12: 37351424-37365980 Glycine max
Glyma.12G214200 2.0kb downstream 2.0kb downstream 2000 false Chr12: 37363981-37365980 Glycine max
Glyma.12G214200 5.0kb upstream 5.0kb upstream 17557 true Chr12: 37346424-37363980 Glycine max
Glyma.12G214200 5.0kb upstream 5.0kb upstream 5000 false Chr12: 37346424-37351423 Glycine max
Glyma.12G214200 5.0kb downstream 5.0kb downstream 17557 true Chr12: 37351424-37368980 Glycine max
Glyma.12G214200 5.0kb downstream 5.0kb downstream 5000 false Chr12: 37363981-37368980 Glycine max
Glyma.12G214200 10.0kb upstream 10.0kb upstream 22557 true Chr12: 37341424-37363980 Glycine max
Glyma.12G214200 10.0kb upstream 10.0kb upstream 10000 false Chr12: 37341424-37351423 Glycine max
Glyma.12G214200 10.0kb downstream 10.0kb downstream 22557 true Chr12: 37351424-37373980 Glycine max
Glyma.12G214200 10.0kb downstream 10.0kb downstream 10000 false Chr12: 37363981-37373980 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306882 5265 Fabidae View MSA
124071393 5270 Rosid View MSA
123738469 5271 Pentapetalae View MSA
122788721 5272 Eudicot View MSA
122045808 5273 Angiosperm View MSA
121347981 5274 Embryophyte View MSA
123380700 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.37794 0.0 12.239    
cufflinks 6.9447 0.0 18.7437   High
cufflinks 3.32155 0.0 9.51081   Low
cufflinks 6.17611 0.0 16.7715    
cufflinks 4.88051 0.0 13.527    
cufflinks 6.97176 0.0 18.833   High
cufflinks 5.34249 0.0 14.7064    
cufflinks 5.99636 0.0 16.3204    
cufflinks 5.79619 0.0 15.8221    
cufflinks 1.741        
cufflinks 0.331       Low
cufflinks 1.329        
cufflinks 1.952        
cufflinks 1.945        
cufflinks 0.568       Low
cufflinks 1.44        
cufflinks 0.575       Low
cufflinks 2.148       High
cufflinks 1.819        
cufflinks 1.019        
cufflinks 0.428       Low
cufflinks 1.295        
cufflinks 1.771        
cufflinks 0.448       Low
cufflinks 1.221        
cufflinks 1.05        

0 Strain