Gene : Glyma.12G215100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33399:SF2 - PSBQ-LIKE PROTEIN 2, CHLOROPLASTIC Genomic Order:  2151
Name:  ? Glyma.12G215100 Secondary Identifier:  ? PAC:30547026
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G215100 0.5kb upstream 0.5kb upstream 2258 true Chr12: 37433635-37435892 Glycine max
Glyma.12G215100 0.5kb upstream 0.5kb upstream 500 false Chr12: 37433635-37434134 Glycine max
Glyma.12G215100 0.5kb downstream 0.5kb downstream 2258 true Chr12: 37434135-37436392 Glycine max
Glyma.12G215100 0.5kb downstream 0.5kb downstream 500 false Chr12: 37435893-37436392 Glycine max
Glyma.12G215100 1.0kb upstream 1.0kb upstream 2758 true Chr12: 37433135-37435892 Glycine max
Glyma.12G215100 1.0kb upstream 1.0kb upstream 1000 false Chr12: 37433135-37434134 Glycine max
Glyma.12G215100 1.0kb downstream 1.0kb downstream 2758 true Chr12: 37434135-37436892 Glycine max
Glyma.12G215100 1.0kb downstream 1.0kb downstream 1000 false Chr12: 37435893-37436892 Glycine max
Glyma.12G215100 2.0kb upstream 2.0kb upstream 3758 true Chr12: 37432135-37435892 Glycine max
Glyma.12G215100 2.0kb upstream 2.0kb upstream 2000 false Chr12: 37432135-37434134 Glycine max
Glyma.12G215100 2.0kb downstream 2.0kb downstream 3758 true Chr12: 37434135-37437892 Glycine max
Glyma.12G215100 2.0kb downstream 2.0kb downstream 2000 false Chr12: 37435893-37437892 Glycine max
Glyma.12G215100 5.0kb upstream 5.0kb upstream 6758 true Chr12: 37429135-37435892 Glycine max
Glyma.12G215100 5.0kb upstream 5.0kb upstream 5000 false Chr12: 37429135-37434134 Glycine max
Glyma.12G215100 5.0kb downstream 5.0kb downstream 6758 true Chr12: 37434135-37440892 Glycine max
Glyma.12G215100 5.0kb downstream 5.0kb downstream 5000 false Chr12: 37435893-37440892 Glycine max
Glyma.12G215100 10.0kb upstream 10.0kb upstream 11758 true Chr12: 37424135-37435892 Glycine max
Glyma.12G215100 10.0kb upstream 10.0kb upstream 10000 false Chr12: 37424135-37434134 Glycine max
Glyma.12G215100 10.0kb downstream 10.0kb downstream 11758 true Chr12: 37434135-37445892 Glycine max
Glyma.12G215100 10.0kb downstream 10.0kb downstream 10000 false Chr12: 37435893-37445892 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306753 5265 Fabidae View MSA
124061827 5270 Rosid View MSA
123739872 5271 Pentapetalae View MSA
122789340 5272 Eudicot View MSA
122046356 5273 Angiosperm View MSA
121310593 5274 Embryophyte View MSA
123348038 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.63918 0.0 17.2448   High
cufflinks 3.39722 0.0 11.1019   High
cufflinks 0.289535 0.0 1.11976    
cufflinks 1.01062 0.0 3.69012    
cufflinks 0.0177502 0.0 0.0815472 Low Low
cufflinks 0.23192 0.0 0.907725 Low  
cufflinks 0.190086 0.0 0.749623 Low  
cufflinks 0.561604 0.0 2.1115    
cufflinks 0.0606537 0.0 0.251072 Low  
cufflinks 1.013        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.381        
cufflinks 0.027     Low Low
cufflinks 0.059     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 18.766     High High
cufflinks 0.062     Low  
cufflinks 1.111        
cufflinks 1.061        
cufflinks 29.457     High High
cufflinks 0.024     Low Low
cufflinks 21.275     High High
cufflinks 11.583     High  
cufflinks 0.02     Low Low
cufflinks 25.647     High High
cufflinks 0.031     Low Low

0 Strain