Gene : Glyma.12G217900 G. max Wm82.a2.v1
Defline:  (1 of 4) 2.1.1.228 - tRNA (guanine(37)-N(1))-methyltransferase / tRNA-(N(1)G37) methyltransferase Genomic Order:  2179
Name:  ? Glyma.12G217900 Secondary Identifier:  ? PAC:30546633
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6829 Glycine max pathologic  
Gmax PWY-7283 Glycine max pathologic  
Gmax PWY-7286 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G217900 0.5kb upstream 0.5kb upstream 7872 true Chr12: 37765287-37773158 Glycine max
Glyma.12G217900 0.5kb upstream 0.5kb upstream 500 false Chr12: 37772659-37773158 Glycine max
Glyma.12G217900 0.5kb downstream 0.5kb downstream 7872 true Chr12: 37764787-37772658 Glycine max
Glyma.12G217900 0.5kb downstream 0.5kb downstream 500 false Chr12: 37764787-37765286 Glycine max
Glyma.12G217900 1.0kb upstream 1.0kb upstream 8372 true Chr12: 37765287-37773658 Glycine max
Glyma.12G217900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 37772659-37773658 Glycine max
Glyma.12G217900 1.0kb downstream 1.0kb downstream 8372 true Chr12: 37764287-37772658 Glycine max
Glyma.12G217900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 37764287-37765286 Glycine max
Glyma.12G217900 2.0kb upstream 2.0kb upstream 9372 true Chr12: 37765287-37774658 Glycine max
Glyma.12G217900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 37772659-37774658 Glycine max
Glyma.12G217900 2.0kb downstream 2.0kb downstream 9372 true Chr12: 37763287-37772658 Glycine max
Glyma.12G217900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 37763287-37765286 Glycine max
Glyma.12G217900 5.0kb upstream 5.0kb upstream 12372 true Chr12: 37765287-37777658 Glycine max
Glyma.12G217900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 37772659-37777658 Glycine max
Glyma.12G217900 5.0kb downstream 5.0kb downstream 12372 true Chr12: 37760287-37772658 Glycine max
Glyma.12G217900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 37760287-37765286 Glycine max
Glyma.12G217900 10.0kb upstream 10.0kb upstream 17372 true Chr12: 37765287-37782658 Glycine max
Glyma.12G217900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 37772659-37782658 Glycine max
Glyma.12G217900 10.0kb downstream 10.0kb downstream 17372 true Chr12: 37755287-37772658 Glycine max
Glyma.12G217900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 37755287-37765286 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313848 5265 Fabidae View MSA
124065435 5270 Rosid View MSA
123747956 5271 Pentapetalae View MSA
122788813 5272 Eudicot View MSA
122045692 5273 Angiosperm View MSA
121347346 5274 Embryophyte View MSA
123426085 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.7302 0.0 21.0386   High
cufflinks 4.39312 0.0 12.6205    
cufflinks 6.19269 0.0 17.1943    
cufflinks 5.90911 0.0 16.4409    
cufflinks 3.56163 0.0 10.4514    
cufflinks 2.59374 0.0 7.97968   Low
cufflinks 4.44258 0.0 12.7133    
cufflinks 4.47113 0.0 12.8184    
cufflinks 3.47051 0.0 10.2493    
cufflinks 0.986        
cufflinks 0.947       Low
cufflinks 1.453        
cufflinks 0.974        
cufflinks 0.99        
cufflinks 0.894       Low
cufflinks 2.263       High
cufflinks 0.975        
cufflinks 1.243        
cufflinks 1.753        
cufflinks 2.611       High
cufflinks 1.293        
cufflinks 2.517       High
cufflinks 2.334       High
cufflinks 1.249        
cufflinks 2.341       High
cufflinks 1.459        

0 Strain