Gene : Glyma.12G209900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12565//PTHR12565:SF82 - STEROL REGULATORY ELEMENT-BINDING PROTEIN Genomic Order:  2099
Name:  ? Glyma.12G209900 Secondary Identifier:  ? PAC:30547195
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G209900 0.5kb upstream 0.5kb upstream 3313 true Chr12: 36902737-36906049 Glycine max
Glyma.12G209900 0.5kb upstream 0.5kb upstream 500 false Chr12: 36905550-36906049 Glycine max
Glyma.12G209900 0.5kb downstream 0.5kb downstream 3313 true Chr12: 36902237-36905549 Glycine max
Glyma.12G209900 0.5kb downstream 0.5kb downstream 500 false Chr12: 36902237-36902736 Glycine max
Glyma.12G209900 1.0kb upstream 1.0kb upstream 3813 true Chr12: 36902737-36906549 Glycine max
Glyma.12G209900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 36905550-36906549 Glycine max
Glyma.12G209900 1.0kb downstream 1.0kb downstream 3813 true Chr12: 36901737-36905549 Glycine max
Glyma.12G209900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 36901737-36902736 Glycine max
Glyma.12G209900 2.0kb upstream 2.0kb upstream 4813 true Chr12: 36902737-36907549 Glycine max
Glyma.12G209900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 36905550-36907549 Glycine max
Glyma.12G209900 2.0kb downstream 2.0kb downstream 4813 true Chr12: 36900737-36905549 Glycine max
Glyma.12G209900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 36900737-36902736 Glycine max
Glyma.12G209900 5.0kb upstream 5.0kb upstream 7813 true Chr12: 36902737-36910549 Glycine max
Glyma.12G209900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 36905550-36910549 Glycine max
Glyma.12G209900 5.0kb downstream 5.0kb downstream 7813 true Chr12: 36897737-36905549 Glycine max
Glyma.12G209900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 36897737-36902736 Glycine max
Glyma.12G209900 10.0kb upstream 10.0kb upstream 12813 true Chr12: 36902737-36915549 Glycine max
Glyma.12G209900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 36905550-36915549 Glycine max
Glyma.12G209900 10.0kb downstream 10.0kb downstream 12813 true Chr12: 36892737-36905549 Glycine max
Glyma.12G209900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 36892737-36902736 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298441 5265 Fabidae View MSA
124070822 5270 Rosid View MSA
123748515 5271 Pentapetalae View MSA
122793981 5272 Eudicot View MSA
122048947 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.388177 0.0 1.4606    
cufflinks 0.887918 0.0 3.19144    
cufflinks 3.23641 0.0 10.0324    
cufflinks 0.029114 0.0 0.123262 Low Low
cufflinks 0.717738 0.0 2.61997    
cufflinks 11.1004 0.0 30.1562   High
cufflinks 0.0121715 0.0 0.055748 Low Low
cufflinks 0.146434 0.0 0.573644 Low  
cufflinks 5.68946 0.0 16.4558   High
cufflinks 0.845        
cufflinks 1.821        
cufflinks 2.455       High
cufflinks 0.77        
cufflinks 0.712        
cufflinks 2.879       High
cufflinks 0.155       Low
cufflinks 1.05        
cufflinks 1.24        
cufflinks 0.648        
cufflinks 0.107       Low
cufflinks 1.201        
cufflinks 0.13       Low
cufflinks 0.155       Low
cufflinks 1.824        
cufflinks 0.119       Low
cufflinks 1.472        

0 Strain