Gene : Glyma.12G210800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31165:SF10 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Genomic Order:  2108
Name:  ? Glyma.12G210800 Secondary Identifier:  ? PAC:30547579
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G210800 0.5kb upstream 0.5kb upstream 5049 true Chr12: 36979633-36984681 Glycine max
Glyma.12G210800 0.5kb upstream 0.5kb upstream 500 false Chr12: 36979633-36980132 Glycine max
Glyma.12G210800 0.5kb downstream 0.5kb downstream 5049 true Chr12: 36980133-36985181 Glycine max
Glyma.12G210800 0.5kb downstream 0.5kb downstream 500 false Chr12: 36984682-36985181 Glycine max
Glyma.12G210800 1.0kb upstream 1.0kb upstream 5549 true Chr12: 36979133-36984681 Glycine max
Glyma.12G210800 1.0kb upstream 1.0kb upstream 1000 false Chr12: 36979133-36980132 Glycine max
Glyma.12G210800 1.0kb downstream 1.0kb downstream 5549 true Chr12: 36980133-36985681 Glycine max
Glyma.12G210800 1.0kb downstream 1.0kb downstream 1000 false Chr12: 36984682-36985681 Glycine max
Glyma.12G210800 2.0kb upstream 2.0kb upstream 6549 true Chr12: 36978133-36984681 Glycine max
Glyma.12G210800 2.0kb upstream 2.0kb upstream 2000 false Chr12: 36978133-36980132 Glycine max
Glyma.12G210800 2.0kb downstream 2.0kb downstream 6549 true Chr12: 36980133-36986681 Glycine max
Glyma.12G210800 2.0kb downstream 2.0kb downstream 2000 false Chr12: 36984682-36986681 Glycine max
Glyma.12G210800 5.0kb upstream 5.0kb upstream 9549 true Chr12: 36975133-36984681 Glycine max
Glyma.12G210800 5.0kb upstream 5.0kb upstream 5000 false Chr12: 36975133-36980132 Glycine max
Glyma.12G210800 5.0kb downstream 5.0kb downstream 9549 true Chr12: 36980133-36989681 Glycine max
Glyma.12G210800 5.0kb downstream 5.0kb downstream 5000 false Chr12: 36984682-36989681 Glycine max
Glyma.12G210800 10.0kb upstream 10.0kb upstream 14549 true Chr12: 36970133-36984681 Glycine max
Glyma.12G210800 10.0kb upstream 10.0kb upstream 10000 false Chr12: 36970133-36980132 Glycine max
Glyma.12G210800 10.0kb downstream 10.0kb downstream 14549 true Chr12: 36980133-36994681 Glycine max
Glyma.12G210800 10.0kb downstream 10.0kb downstream 10000 false Chr12: 36984682-36994681 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792183 5273 Angiosperm View MSA
122309730 5265 Fabidae View MSA
124064953 5270 Rosid View MSA
123750207 5271 Pentapetalae View MSA
122796804 5272 Eudicot View MSA
121063429 5274 Embryophyte View MSA
123103178 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0215493 0.0 0.0974573 Low Low
cufflinks 8.29324 0.0 24.1623    
cufflinks 0.156477 0.0 0.621 Low Low
cufflinks 2.36016 0.0 8.11894    
cufflinks 10.5373 0.0 29.8541    
cufflinks 3.01205 0.0 10.0844    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 12.385 0.0 34.3921    
cufflinks 13.2221 0.0 36.5611    
cufflinks 1.0        
cufflinks 0.868        
cufflinks 0.038     Low  
cufflinks 1.404        
cufflinks 2.325        
cufflinks 0.446        
cufflinks 0.089     Low  
cufflinks 1.647        
cufflinks 0.076     Low  
cufflinks 0.815        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.401       High
cufflinks 0.01     Low Low
cufflinks 0.004     Low Low
cufflinks 1.598        
cufflinks 0.037     Low  
cufflinks 1.425        

0 Strain