Gene : Glyma.13G010700 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR11289 - BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2 Genomic Order:  107
Name:  ? Glyma.13G010700 Secondary Identifier:  ? PAC:30501856
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G010700 0.5kb upstream 0.5kb upstream 11797 true Chr13: 2899513-2911309 Glycine max
Glyma.13G010700 0.5kb upstream 0.5kb upstream 500 false Chr13: 2899513-2900012 Glycine max
Glyma.13G010700 0.5kb downstream 0.5kb downstream 11797 true Chr13: 2900013-2911809 Glycine max
Glyma.13G010700 0.5kb downstream 0.5kb downstream 500 false Chr13: 2911310-2911809 Glycine max
Glyma.13G010700 1.0kb upstream 1.0kb upstream 12297 true Chr13: 2899013-2911309 Glycine max
Glyma.13G010700 1.0kb upstream 1.0kb upstream 1000 false Chr13: 2899013-2900012 Glycine max
Glyma.13G010700 1.0kb downstream 1.0kb downstream 12297 true Chr13: 2900013-2912309 Glycine max
Glyma.13G010700 1.0kb downstream 1.0kb downstream 1000 false Chr13: 2911310-2912309 Glycine max
Glyma.13G010700 2.0kb upstream 2.0kb upstream 13297 true Chr13: 2898013-2911309 Glycine max
Glyma.13G010700 2.0kb upstream 2.0kb upstream 2000 false Chr13: 2898013-2900012 Glycine max
Glyma.13G010700 2.0kb downstream 2.0kb downstream 13297 true Chr13: 2900013-2913309 Glycine max
Glyma.13G010700 2.0kb downstream 2.0kb downstream 2000 false Chr13: 2911310-2913309 Glycine max
Glyma.13G010700 5.0kb upstream 5.0kb upstream 16297 true Chr13: 2895013-2911309 Glycine max
Glyma.13G010700 5.0kb upstream 5.0kb upstream 5000 false Chr13: 2895013-2900012 Glycine max
Glyma.13G010700 5.0kb downstream 5.0kb downstream 16297 true Chr13: 2900013-2916309 Glycine max
Glyma.13G010700 5.0kb downstream 5.0kb downstream 5000 false Chr13: 2911310-2916309 Glycine max
Glyma.13G010700 10.0kb upstream 10.0kb upstream 21297 true Chr13: 2890013-2911309 Glycine max
Glyma.13G010700 10.0kb upstream 10.0kb upstream 10000 false Chr13: 2890013-2900012 Glycine max
Glyma.13G010700 10.0kb downstream 10.0kb downstream 21297 true Chr13: 2900013-2921309 Glycine max
Glyma.13G010700 10.0kb downstream 10.0kb downstream 10000 false Chr13: 2911310-2921309 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309422 5265 Fabidae View MSA
124050402 5270 Rosid View MSA
123749189 5271 Pentapetalae View MSA
122786519 5272 Eudicot View MSA
122044461 5273 Angiosperm View MSA
121310297 5274 Embryophyte View MSA
123425131 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.433674 0.0 3.17659   Low
cufflinks 2.91608 0.0 9.72017   High
cufflinks 0.878594 0.0 3.15947    
cufflinks 0.968285 0.0 4.75795    
cufflinks 2.02047 0.0 9.27583    
cufflinks 0.88932 0.0 4.31788    
cufflinks 1.4961 0.0 6.08997    
cufflinks 0.847912 0.0 4.64916    
cufflinks 1.92794 0.0 7.2395    
cufflinks 0.405        
cufflinks 0.198        
cufflinks 0.305        
cufflinks 0.702       High
cufflinks 0.746       High
cufflinks 0.067       Low
cufflinks 0.386        
cufflinks 0.168        
cufflinks 0.279        
cufflinks 1.002       High
cufflinks 0.246        
cufflinks 0.184        
cufflinks 0.278        
cufflinks 0.797       High
cufflinks 0.215        
cufflinks 0.282        
cufflinks 0.268        

0 Strain