Gene : Glyma.13G000200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11946//PTHR11946:SF78 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES Genomic Order:  2
Name:  ? Glyma.13G000200 Secondary Identifier:  ? PAC:30501251
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

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Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G000200 0.5kb upstream 0.5kb upstream 5213 true Chr13: 97657-102869 Glycine max
Glyma.13G000200 0.5kb upstream 0.5kb upstream 500 false Chr13: 97657-98156 Glycine max
Glyma.13G000200 0.5kb downstream 0.5kb downstream 5213 true Chr13: 98157-103369 Glycine max
Glyma.13G000200 0.5kb downstream 0.5kb downstream 500 false Chr13: 102870-103369 Glycine max
Glyma.13G000200 1.0kb upstream 1.0kb upstream 5713 true Chr13: 97157-102869 Glycine max
Glyma.13G000200 1.0kb upstream 1.0kb upstream 1000 false Chr13: 97157-98156 Glycine max
Glyma.13G000200 1.0kb downstream 1.0kb downstream 5713 true Chr13: 98157-103869 Glycine max
Glyma.13G000200 1.0kb downstream 1.0kb downstream 1000 false Chr13: 102870-103869 Glycine max
Glyma.13G000200 2.0kb upstream 2.0kb upstream 6713 true Chr13: 96157-102869 Glycine max
Glyma.13G000200 2.0kb upstream 2.0kb upstream 2000 false Chr13: 96157-98156 Glycine max
Glyma.13G000200 2.0kb downstream 2.0kb downstream 6713 true Chr13: 98157-104869 Glycine max
Glyma.13G000200 2.0kb downstream 2.0kb downstream 2000 false Chr13: 102870-104869 Glycine max
Glyma.13G000200 5.0kb upstream 5.0kb upstream 9713 true Chr13: 93157-102869 Glycine max
Glyma.13G000200 5.0kb upstream 5.0kb upstream 5000 false Chr13: 93157-98156 Glycine max
Glyma.13G000200 5.0kb downstream 5.0kb downstream 9713 true Chr13: 98157-107869 Glycine max
Glyma.13G000200 5.0kb downstream 5.0kb downstream 5000 false Chr13: 102870-107869 Glycine max
Glyma.13G000200 10.0kb upstream 10.0kb upstream 14713 true Chr13: 88157-102869 Glycine max
Glyma.13G000200 10.0kb upstream 10.0kb upstream 10000 false Chr13: 88157-98156 Glycine max
Glyma.13G000200 10.0kb downstream 10.0kb downstream 14713 true Chr13: 98157-112869 Glycine max
Glyma.13G000200 10.0kb downstream 10.0kb downstream 10000 false Chr13: 102870-112869 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030375 5273 Angiosperm View MSA
122240845 5265 Fabidae Singleton cluster - no MSA
123985816 5270 Rosid Singleton cluster - no MSA
123561204 5271 Pentapetalae Singleton cluster - no MSA
122595995 5272 Eudicot Singleton cluster - no MSA
121299555 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.47588 0.0 1.7389    
cufflinks 1.32183 0.0 4.43217    
cufflinks 0.559274 0.0 2.01922    
cufflinks 1.05558 0.0 3.62757    
cufflinks 0.569271 0.0 2.0585    
cufflinks 0.370589 0.0 1.37235   Low
cufflinks 2.99838 0.0 9.00075   High
cufflinks 2.74498 0.0 8.32546   High
cufflinks 0.673499 0.0 2.40626    
cufflinks 0.863       High
cufflinks 0.052     Low Low
cufflinks 0.499        
cufflinks 0.295        
cufflinks 0.56        
cufflinks 0.064       Low
cufflinks 0.235        
cufflinks 0.07       Low
cufflinks 1.206       High
cufflinks 0.403        
cufflinks 0.224        
cufflinks 0.175        
cufflinks 0.232        
cufflinks 0.188        
cufflinks 0.128        
cufflinks 0.312        
cufflinks 0.185        

0 Strain