Gene : Glyma.12G237000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13301//PTHR13301:SF79 - X-BOX TRANSCRIPTION FACTOR-RELATED Genomic Order:  2370
Name:  ? Glyma.12G237000 Secondary Identifier:  ? PAC:30548765
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1001 Glycine max pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G237000 0.5kb upstream 0.5kb upstream 8378 true Chr12: 39586413-39594790 Glycine max
Glyma.12G237000 0.5kb upstream 0.5kb upstream 500 false Chr12: 39586413-39586912 Glycine max
Glyma.12G237000 0.5kb downstream 0.5kb downstream 8378 true Chr12: 39586913-39595290 Glycine max
Glyma.12G237000 0.5kb downstream 0.5kb downstream 500 false Chr12: 39594791-39595290 Glycine max
Glyma.12G237000 1.0kb upstream 1.0kb upstream 8878 true Chr12: 39585913-39594790 Glycine max
Glyma.12G237000 1.0kb upstream 1.0kb upstream 1000 false Chr12: 39585913-39586912 Glycine max
Glyma.12G237000 1.0kb downstream 1.0kb downstream 8878 true Chr12: 39586913-39595790 Glycine max
Glyma.12G237000 1.0kb downstream 1.0kb downstream 1000 false Chr12: 39594791-39595790 Glycine max
Glyma.12G237000 2.0kb upstream 2.0kb upstream 9878 true Chr12: 39584913-39594790 Glycine max
Glyma.12G237000 2.0kb upstream 2.0kb upstream 2000 false Chr12: 39584913-39586912 Glycine max
Glyma.12G237000 2.0kb downstream 2.0kb downstream 9878 true Chr12: 39586913-39596790 Glycine max
Glyma.12G237000 2.0kb downstream 2.0kb downstream 2000 false Chr12: 39594791-39596790 Glycine max
Glyma.12G237000 5.0kb upstream 5.0kb upstream 12878 true Chr12: 39581913-39594790 Glycine max
Glyma.12G237000 5.0kb upstream 5.0kb upstream 5000 false Chr12: 39581913-39586912 Glycine max
Glyma.12G237000 5.0kb downstream 5.0kb downstream 12878 true Chr12: 39586913-39599790 Glycine max
Glyma.12G237000 5.0kb downstream 5.0kb downstream 5000 false Chr12: 39594791-39599790 Glycine max
Glyma.12G237000 10.0kb upstream 10.0kb upstream 17878 true Chr12: 39576913-39594790 Glycine max
Glyma.12G237000 10.0kb upstream 10.0kb upstream 10000 false Chr12: 39576913-39586912 Glycine max
Glyma.12G237000 10.0kb downstream 10.0kb downstream 17878 true Chr12: 39586913-39604790 Glycine max
Glyma.12G237000 10.0kb downstream 10.0kb downstream 10000 false Chr12: 39594791-39604790 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314851 5265 Fabidae View MSA
124068602 5270 Rosid View MSA
123746424 5271 Pentapetalae View MSA
122793475 5272 Eudicot View MSA
122046929 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 63.072 0.0 213.663 High  
cufflinks 58.8139 0.0 196.198 High  
cufflinks 65.1316 0.0 223.722 High  
cufflinks 126.932 0.0 523.288 High High
cufflinks 31.7141 0.0 94.406 High  
cufflinks 10.7052 0.0 28.7355   Low
cufflinks 106.85 0.0 415.653 High  
cufflinks 65.3434 0.0 223.997 High  
cufflinks 36.6399 0.0 111.897 High  
cufflinks 37.248     High  
cufflinks 9.583     High Low
cufflinks 38.427     High  
cufflinks 8.814     High Low
cufflinks 3.523       Low
cufflinks 50.579     High  
cufflinks 62.181     High High
cufflinks 24.497     High  
cufflinks 42.951     High  
cufflinks 35.998     High  
cufflinks 70.695     High High
cufflinks 14.803     High  
cufflinks 55.717     High  
cufflinks 28.56     High  
cufflinks 8.485     High Low
cufflinks 54.364     High  
cufflinks 22.654     High  

0 Strain