Gene : Glyma.12G238100 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR10366:SF425 - BRASSINOSTEROID METABOLIC PATHWAY PROTEIN BEN1 Genomic Order:  2381
Name:  ? Glyma.12G238100 Secondary Identifier:  ? PAC:30545599
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-2229 Glycine max pathologic  
Gmax PWY-2463 Glycine max pathologic  
Gmax PWY-2464 Glycine max pathologic  
Gmax PWY-2761 Glycine max pathologic  
Gmax PWY-5717 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G238100 0.5kb upstream 0.5kb upstream 2691 true Chr12: 39720595-39723285 Glycine max
Glyma.12G238100 0.5kb upstream 0.5kb upstream 500 false Chr12: 39722786-39723285 Glycine max
Glyma.12G238100 0.5kb downstream 0.5kb downstream 2691 true Chr12: 39720095-39722785 Glycine max
Glyma.12G238100 0.5kb downstream 0.5kb downstream 500 false Chr12: 39720095-39720594 Glycine max
Glyma.12G238100 1.0kb upstream 1.0kb upstream 3191 true Chr12: 39720595-39723785 Glycine max
Glyma.12G238100 1.0kb upstream 1.0kb upstream 1000 false Chr12: 39722786-39723785 Glycine max
Glyma.12G238100 1.0kb downstream 1.0kb downstream 3191 true Chr12: 39719595-39722785 Glycine max
Glyma.12G238100 1.0kb downstream 1.0kb downstream 1000 false Chr12: 39719595-39720594 Glycine max
Glyma.12G238100 2.0kb upstream 2.0kb upstream 4191 true Chr12: 39720595-39724785 Glycine max
Glyma.12G238100 2.0kb upstream 2.0kb upstream 2000 false Chr12: 39722786-39724785 Glycine max
Glyma.12G238100 2.0kb downstream 2.0kb downstream 4191 true Chr12: 39718595-39722785 Glycine max
Glyma.12G238100 2.0kb downstream 2.0kb downstream 2000 false Chr12: 39718595-39720594 Glycine max
Glyma.12G238100 5.0kb upstream 5.0kb upstream 7191 true Chr12: 39720595-39727785 Glycine max
Glyma.12G238100 5.0kb upstream 5.0kb upstream 5000 false Chr12: 39722786-39727785 Glycine max
Glyma.12G238100 5.0kb downstream 5.0kb downstream 7191 true Chr12: 39715595-39722785 Glycine max
Glyma.12G238100 5.0kb downstream 5.0kb downstream 5000 false Chr12: 39715595-39720594 Glycine max
Glyma.12G238100 10.0kb upstream 10.0kb upstream 12191 true Chr12: 39720595-39732785 Glycine max
Glyma.12G238100 10.0kb upstream 10.0kb upstream 10000 false Chr12: 39722786-39732785 Glycine max
Glyma.12G238100 10.0kb downstream 10.0kb downstream 12191 true Chr12: 39710595-39722785 Glycine max
Glyma.12G238100 10.0kb downstream 10.0kb downstream 10000 false Chr12: 39710595-39720594 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122031301 5273 Angiosperm View MSA
122253595 5265 Fabidae View MSA
124066855 5270 Rosid View MSA
123745083 5271 Pentapetalae View MSA
122790638 5272 Eudicot View MSA
121300366 5274 Embryophyte View MSA
123428289 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.351584 0.0 1.35593    
cufflinks 6.71426 0.0 20.1291   High
cufflinks 1.24188 0.0 4.48982    
cufflinks 2.59809 0.0 8.84893   High
cufflinks 0.0184447 0.0 0.084738 Low Low
cufflinks 0.242452 0.0 0.948946 Low  
cufflinks 0.210059 0.0 0.826664    
cufflinks 0.231279 0.0 0.906022 Low  
cufflinks 0.149277 0.0 0.594212 Low  
cufflinks 1.904        
cufflinks 0.009     Low Low
cufflinks 2.271        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low Low
cufflinks 0.017     Low Low
cufflinks 0.463        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.433       High
cufflinks 3.833       High
cufflinks 0.365        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.478        
cufflinks 0.697        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.475        
cufflinks 0.018     Low Low

0 Strain