Gene : Glyma.13G042400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33735:SF4 - EXPRESSED PROTEIN Genomic Order:  424
Name:  ? Glyma.13G042400 Secondary Identifier:  ? PAC:30501019
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G042400 0.5kb upstream 0.5kb upstream 3618 true Chr13: 13557624-13561241 Glycine max
Glyma.13G042400 0.5kb upstream 0.5kb upstream 500 false Chr13: 13557624-13558123 Glycine max
Glyma.13G042400 0.5kb downstream 0.5kb downstream 3618 true Chr13: 13558124-13561741 Glycine max
Glyma.13G042400 0.5kb downstream 0.5kb downstream 500 false Chr13: 13561242-13561741 Glycine max
Glyma.13G042400 1.0kb upstream 1.0kb upstream 4118 true Chr13: 13557124-13561241 Glycine max
Glyma.13G042400 1.0kb upstream 1.0kb upstream 1000 false Chr13: 13557124-13558123 Glycine max
Glyma.13G042400 1.0kb downstream 1.0kb downstream 4118 true Chr13: 13558124-13562241 Glycine max
Glyma.13G042400 1.0kb downstream 1.0kb downstream 1000 false Chr13: 13561242-13562241 Glycine max
Glyma.13G042400 2.0kb upstream 2.0kb upstream 5118 true Chr13: 13556124-13561241 Glycine max
Glyma.13G042400 2.0kb upstream 2.0kb upstream 2000 false Chr13: 13556124-13558123 Glycine max
Glyma.13G042400 2.0kb downstream 2.0kb downstream 5118 true Chr13: 13558124-13563241 Glycine max
Glyma.13G042400 2.0kb downstream 2.0kb downstream 2000 false Chr13: 13561242-13563241 Glycine max
Glyma.13G042400 5.0kb upstream 5.0kb upstream 8118 true Chr13: 13553124-13561241 Glycine max
Glyma.13G042400 5.0kb upstream 5.0kb upstream 5000 false Chr13: 13553124-13558123 Glycine max
Glyma.13G042400 5.0kb downstream 5.0kb downstream 8118 true Chr13: 13558124-13566241 Glycine max
Glyma.13G042400 5.0kb downstream 5.0kb downstream 5000 false Chr13: 13561242-13566241 Glycine max
Glyma.13G042400 10.0kb upstream 10.0kb upstream 13118 true Chr13: 13548124-13561241 Glycine max
Glyma.13G042400 10.0kb upstream 10.0kb upstream 10000 false Chr13: 13548124-13558123 Glycine max
Glyma.13G042400 10.0kb downstream 10.0kb downstream 13118 true Chr13: 13558124-13571241 Glycine max
Glyma.13G042400 10.0kb downstream 10.0kb downstream 10000 false Chr13: 13561242-13571241 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028643 5273 Angiosperm View MSA
122303913 5265 Fabidae View MSA
124066096 5270 Rosid View MSA
123741329 5271 Pentapetalae View MSA
122796561 5272 Eudicot View MSA
121298100 5274 Embryophyte View MSA
123336097 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.764495 0.0 2.80006    
cufflinks 0.731554 0.0 2.68074    
cufflinks 27.4478 0.0 73.4225 High High
cufflinks 0.455567 0.0 1.70897   Low
cufflinks 1.38071 0.0 4.86272    
cufflinks 19.4651 0.0 52.0043   High
cufflinks 0.714273 0.0 2.62952    
cufflinks 4.33157 0.0 13.1961    
cufflinks 4.11842 0.0 12.6525    
cufflinks 0.963        
cufflinks 4.621       High
cufflinks 6.789       High
cufflinks 2.717        
cufflinks 1.367        
cufflinks 0.145       Low
cufflinks 0.635        
cufflinks 0.649        
cufflinks 1.993        
cufflinks 0.341       Low
cufflinks 1.205        
cufflinks 2.309        
cufflinks 1.028        
cufflinks 0.532        
cufflinks 8.094     High High
cufflinks 0.985        
cufflinks 2.071        

0 Strain