Gene : Glyma.13G046200 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR31262:SF4 - RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A, CHLOROPLASTIC-RELATED Genomic Order:  462
Name:  ? Glyma.13G046200 Secondary Identifier:  ? PAC:30500319
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CALVIN-PWY Glycine max pathologic  
Gmax PHOTOALL-PWY Glycine max pathologic  
Gmax PWY-5723 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G046200 0.5kb upstream 0.5kb upstream 1995 true Chr13: 14043433-14045427 Glycine max
Glyma.13G046200 0.5kb upstream 0.5kb upstream 500 false Chr13: 14044928-14045427 Glycine max
Glyma.13G046200 0.5kb downstream 0.5kb downstream 1995 true Chr13: 14042933-14044927 Glycine max
Glyma.13G046200 0.5kb downstream 0.5kb downstream 500 false Chr13: 14042933-14043432 Glycine max
Glyma.13G046200 1.0kb upstream 1.0kb upstream 2495 true Chr13: 14043433-14045927 Glycine max
Glyma.13G046200 1.0kb upstream 1.0kb upstream 1000 false Chr13: 14044928-14045927 Glycine max
Glyma.13G046200 1.0kb downstream 1.0kb downstream 2495 true Chr13: 14042433-14044927 Glycine max
Glyma.13G046200 1.0kb downstream 1.0kb downstream 1000 false Chr13: 14042433-14043432 Glycine max
Glyma.13G046200 2.0kb upstream 2.0kb upstream 3495 true Chr13: 14043433-14046927 Glycine max
Glyma.13G046200 2.0kb upstream 2.0kb upstream 2000 false Chr13: 14044928-14046927 Glycine max
Glyma.13G046200 2.0kb downstream 2.0kb downstream 3495 true Chr13: 14041433-14044927 Glycine max
Glyma.13G046200 2.0kb downstream 2.0kb downstream 2000 false Chr13: 14041433-14043432 Glycine max
Glyma.13G046200 5.0kb upstream 5.0kb upstream 6495 true Chr13: 14043433-14049927 Glycine max
Glyma.13G046200 5.0kb upstream 5.0kb upstream 5000 false Chr13: 14044928-14049927 Glycine max
Glyma.13G046200 5.0kb downstream 5.0kb downstream 6495 true Chr13: 14038433-14044927 Glycine max
Glyma.13G046200 5.0kb downstream 5.0kb downstream 5000 false Chr13: 14038433-14043432 Glycine max
Glyma.13G046200 10.0kb upstream 10.0kb upstream 11495 true Chr13: 14043433-14054927 Glycine max
Glyma.13G046200 10.0kb upstream 10.0kb upstream 10000 false Chr13: 14044928-14054927 Glycine max
Glyma.13G046200 10.0kb downstream 10.0kb downstream 11495 true Chr13: 14033433-14044927 Glycine max
Glyma.13G046200 10.0kb downstream 10.0kb downstream 10000 false Chr13: 14033433-14043432 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314391 5265 Fabidae View MSA
124066802 5270 Rosid View MSA
123747186 5271 Pentapetalae View MSA
122796864 5272 Eudicot View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1107.82 0.0 5745.41 High High
cufflinks 535.515 0.0 2134.54 High  
cufflinks 73.8729 0.0 202.705 High  
cufflinks 352.936 0.0 1249.6 High  
cufflinks 25.0366 0.0 67.1764 High Low
cufflinks 27.5794 0.0 73.7976 High Low
cufflinks 243.729 0.0 795.357 High  
cufflinks 168.708 0.0 515.461 High  
cufflinks 15.5763 0.0 42.9335   Low
cufflinks 226.663     High  
cufflinks 0.261        
cufflinks 75.17     High  
cufflinks 0.066     Low Low
cufflinks 0.053     Low Low
cufflinks 0.937        
cufflinks 2858.48     High High
cufflinks 0.11       Low
cufflinks 103.883     High  
cufflinks 281.15     High  
cufflinks 2955.973     High High
cufflinks 0.328        
cufflinks 2305.684     High High
cufflinks 1955.965     High High
cufflinks 0.296        
cufflinks 3083.032     High High
cufflinks 0.292        

0 Strain