Gene : Glyma.13G047300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  473
Name:  ? Glyma.13G047300 Secondary Identifier:  ? PAC:30500444
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-735 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G047300 0.5kb upstream 0.5kb upstream 3081 true Chr13: 14193855-14196935 Glycine max
Glyma.13G047300 0.5kb upstream 0.5kb upstream 500 false Chr13: 14196436-14196935 Glycine max
Glyma.13G047300 0.5kb downstream 0.5kb downstream 3081 true Chr13: 14193355-14196435 Glycine max
Glyma.13G047300 0.5kb downstream 0.5kb downstream 500 false Chr13: 14193355-14193854 Glycine max
Glyma.13G047300 1.0kb upstream 1.0kb upstream 3581 true Chr13: 14193855-14197435 Glycine max
Glyma.13G047300 1.0kb upstream 1.0kb upstream 1000 false Chr13: 14196436-14197435 Glycine max
Glyma.13G047300 1.0kb downstream 1.0kb downstream 3581 true Chr13: 14192855-14196435 Glycine max
Glyma.13G047300 1.0kb downstream 1.0kb downstream 1000 false Chr13: 14192855-14193854 Glycine max
Glyma.13G047300 2.0kb upstream 2.0kb upstream 4581 true Chr13: 14193855-14198435 Glycine max
Glyma.13G047300 2.0kb upstream 2.0kb upstream 2000 false Chr13: 14196436-14198435 Glycine max
Glyma.13G047300 2.0kb downstream 2.0kb downstream 4581 true Chr13: 14191855-14196435 Glycine max
Glyma.13G047300 2.0kb downstream 2.0kb downstream 2000 false Chr13: 14191855-14193854 Glycine max
Glyma.13G047300 5.0kb upstream 5.0kb upstream 7581 true Chr13: 14193855-14201435 Glycine max
Glyma.13G047300 5.0kb upstream 5.0kb upstream 5000 false Chr13: 14196436-14201435 Glycine max
Glyma.13G047300 5.0kb downstream 5.0kb downstream 7581 true Chr13: 14188855-14196435 Glycine max
Glyma.13G047300 5.0kb downstream 5.0kb downstream 5000 false Chr13: 14188855-14193854 Glycine max
Glyma.13G047300 10.0kb upstream 10.0kb upstream 12581 true Chr13: 14193855-14206435 Glycine max
Glyma.13G047300 10.0kb upstream 10.0kb upstream 10000 false Chr13: 14196436-14206435 Glycine max
Glyma.13G047300 10.0kb downstream 10.0kb downstream 12581 true Chr13: 14183855-14196435 Glycine max
Glyma.13G047300 10.0kb downstream 10.0kb downstream 10000 false Chr13: 14183855-14193854 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298183 5265 Fabidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.84176 0.0 19.3614   Low
cufflinks 29.3875 0.0 79.033 High  
cufflinks 6.7299 0.0 18.9906   Low
cufflinks 39.4928 0.0 108.045 High High
cufflinks 47.4873 0.0 131.609 High High
cufflinks 20.9441 0.0 55.8834    
cufflinks 15.1163 0.0 40.5179    
cufflinks 18.4292 0.0 49.1747    
cufflinks 20.0968 0.0 53.616 High  
cufflinks 278.526     High High
cufflinks 8.402     High  
cufflinks 38.367     High  
cufflinks 47.446     High  
cufflinks 29.278     High  
cufflinks 2.33       Low
cufflinks 7.3     High  
cufflinks 469.361     High High
cufflinks 69.894     High  
cufflinks 23.424     High  
cufflinks 3.589       Low
cufflinks 8.359     High  
cufflinks 2.844       Low
cufflinks 69.936     High  
cufflinks 3.755       Low
cufflinks 3.935        
cufflinks 33.238     High  

0 Strain