Gene : Glyma.13G041200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  412
Name:  ? Glyma.13G041200 Secondary Identifier:  ? PAC:30503154
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G041200 0.5kb upstream 0.5kb upstream 6899 true Chr13: 13161676-13168574 Glycine max
Glyma.13G041200 0.5kb upstream 0.5kb upstream 500 false Chr13: 13161676-13162175 Glycine max
Glyma.13G041200 0.5kb downstream 0.5kb downstream 6899 true Chr13: 13162176-13169074 Glycine max
Glyma.13G041200 0.5kb downstream 0.5kb downstream 500 false Chr13: 13168575-13169074 Glycine max
Glyma.13G041200 1.0kb upstream 1.0kb upstream 7399 true Chr13: 13161176-13168574 Glycine max
Glyma.13G041200 1.0kb upstream 1.0kb upstream 1000 false Chr13: 13161176-13162175 Glycine max
Glyma.13G041200 1.0kb downstream 1.0kb downstream 7399 true Chr13: 13162176-13169574 Glycine max
Glyma.13G041200 1.0kb downstream 1.0kb downstream 1000 false Chr13: 13168575-13169574 Glycine max
Glyma.13G041200 2.0kb upstream 2.0kb upstream 8399 true Chr13: 13160176-13168574 Glycine max
Glyma.13G041200 2.0kb upstream 2.0kb upstream 2000 false Chr13: 13160176-13162175 Glycine max
Glyma.13G041200 2.0kb downstream 2.0kb downstream 8399 true Chr13: 13162176-13170574 Glycine max
Glyma.13G041200 2.0kb downstream 2.0kb downstream 2000 false Chr13: 13168575-13170574 Glycine max
Glyma.13G041200 5.0kb upstream 5.0kb upstream 11399 true Chr13: 13157176-13168574 Glycine max
Glyma.13G041200 5.0kb upstream 5.0kb upstream 5000 false Chr13: 13157176-13162175 Glycine max
Glyma.13G041200 5.0kb downstream 5.0kb downstream 11399 true Chr13: 13162176-13173574 Glycine max
Glyma.13G041200 5.0kb downstream 5.0kb downstream 5000 false Chr13: 13168575-13173574 Glycine max
Glyma.13G041200 10.0kb upstream 10.0kb upstream 16399 true Chr13: 13152176-13168574 Glycine max
Glyma.13G041200 10.0kb upstream 10.0kb upstream 10000 false Chr13: 13152176-13162175 Glycine max
Glyma.13G041200 10.0kb downstream 10.0kb downstream 16399 true Chr13: 13162176-13178574 Glycine max
Glyma.13G041200 10.0kb downstream 10.0kb downstream 10000 false Chr13: 13168575-13178574 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026363 5273 Angiosperm View MSA
122311905 5265 Fabidae View MSA
124065012 5270 Rosid View MSA
123740689 5271 Pentapetalae View MSA
122788659 5272 Eudicot View MSA
121349199 5274 Embryophyte View MSA
123381214 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.8613 0.0 134.141 High High
cufflinks 10.03 0.0 42.5914    
cufflinks 15.5906 0.0 64.1387    
cufflinks 13.636 0.0 56.6359    
cufflinks 7.68178 0.0 34.1016    
cufflinks 6.00913 0.0 22.8719    
cufflinks 4.162 0.0 20.2068   Low
cufflinks 11.0664 0.0 46.5231    
cufflinks 3.65326 0.0 18.1756   Low
cufflinks 1.048        
cufflinks 0.353       Low
cufflinks 1.207        
cufflinks 0.642        
cufflinks 0.516        
cufflinks 0.228       Low
cufflinks 2.388       High
cufflinks 0.648        
cufflinks 0.829        
cufflinks 1.084        
cufflinks 1.421        
cufflinks 0.285       Low
cufflinks 2.314       High
cufflinks 1.606        
cufflinks 0.29       Low
cufflinks 2.541       High
cufflinks 0.56        

0 Strain