Gene : Glyma.13G041500 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR24012:SF386 - PHRAGMOPLASTIN INTERACTING PROTEIN 1 Genomic Order:  415
Name:  ? Glyma.13G041500 Secondary Identifier:  ? PAC:30504442
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G041500 0.5kb upstream 0.5kb upstream 7142 true Chr13: 13324372-13331513 Glycine max
Glyma.13G041500 0.5kb upstream 0.5kb upstream 500 false Chr13: 13324372-13324871 Glycine max
Glyma.13G041500 0.5kb downstream 0.5kb downstream 7142 true Chr13: 13324872-13332013 Glycine max
Glyma.13G041500 0.5kb downstream 0.5kb downstream 500 false Chr13: 13331514-13332013 Glycine max
Glyma.13G041500 1.0kb upstream 1.0kb upstream 7642 true Chr13: 13323872-13331513 Glycine max
Glyma.13G041500 1.0kb upstream 1.0kb upstream 1000 false Chr13: 13323872-13324871 Glycine max
Glyma.13G041500 1.0kb downstream 1.0kb downstream 7642 true Chr13: 13324872-13332513 Glycine max
Glyma.13G041500 1.0kb downstream 1.0kb downstream 1000 false Chr13: 13331514-13332513 Glycine max
Glyma.13G041500 2.0kb upstream 2.0kb upstream 8642 true Chr13: 13322872-13331513 Glycine max
Glyma.13G041500 2.0kb upstream 2.0kb upstream 2000 false Chr13: 13322872-13324871 Glycine max
Glyma.13G041500 2.0kb downstream 2.0kb downstream 8642 true Chr13: 13324872-13333513 Glycine max
Glyma.13G041500 2.0kb downstream 2.0kb downstream 2000 false Chr13: 13331514-13333513 Glycine max
Glyma.13G041500 5.0kb upstream 5.0kb upstream 11642 true Chr13: 13319872-13331513 Glycine max
Glyma.13G041500 5.0kb upstream 5.0kb upstream 5000 false Chr13: 13319872-13324871 Glycine max
Glyma.13G041500 5.0kb downstream 5.0kb downstream 11642 true Chr13: 13324872-13336513 Glycine max
Glyma.13G041500 5.0kb downstream 5.0kb downstream 5000 false Chr13: 13331514-13336513 Glycine max
Glyma.13G041500 10.0kb upstream 10.0kb upstream 16642 true Chr13: 13314872-13331513 Glycine max
Glyma.13G041500 10.0kb upstream 10.0kb upstream 10000 false Chr13: 13314872-13324871 Glycine max
Glyma.13G041500 10.0kb downstream 10.0kb downstream 16642 true Chr13: 13324872-13341513 Glycine max
Glyma.13G041500 10.0kb downstream 10.0kb downstream 10000 false Chr13: 13331514-13341513 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312485 5265 Fabidae View MSA
124060480 5270 Rosid View MSA
123737702 5271 Pentapetalae View MSA
122796328 5272 Eudicot View MSA
122049388 5273 Angiosperm View MSA
121345095 5274 Embryophyte View MSA
123424707 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.1958 0.0 48.0767    
cufflinks 13.9414 0.0 41.7549   Low
cufflinks 16.6825 0.0 49.6069    
cufflinks 17.288 0.0 51.4096   High
cufflinks 17.019 0.0 50.5198    
cufflinks 13.9084 0.0 41.6159   Low
cufflinks 15.9306 0.0 47.1835    
cufflinks 16.4585 0.0 48.7816    
cufflinks 13.3051 0.0 39.9307   Low
cufflinks 4.691        
cufflinks 2.749       Low
cufflinks 4.626        
cufflinks 5.752       High
cufflinks 6.13       High
cufflinks 3.003       Low
cufflinks 5.022        
cufflinks 3.153       Low
cufflinks 4.885        
cufflinks 5.219        
cufflinks 5.225        
cufflinks 2.961       Low
cufflinks 5.136        
cufflinks 4.82        
cufflinks 2.912       Low
cufflinks 5.094        
cufflinks 3.86        

0 Strain