Gene : Glyma.13G078400 G. max Wm82.a2.v1
Defline:  (1 of 4) 1.14.13.122 - Chlorophyllide-a oxygenase / Cholorophyll-b synthase Genomic Order:  784
Name:  ? Glyma.13G078400 Secondary Identifier:  ? PAC:30502714
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5068 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G078400 0.5kb upstream 0.5kb upstream 6499 true Chr13: 18427751-18434249 Glycine max
Glyma.13G078400 0.5kb upstream 0.5kb upstream 500 false Chr13: 18433750-18434249 Glycine max
Glyma.13G078400 0.5kb downstream 0.5kb downstream 6499 true Chr13: 18427251-18433749 Glycine max
Glyma.13G078400 0.5kb downstream 0.5kb downstream 500 false Chr13: 18427251-18427750 Glycine max
Glyma.13G078400 1.0kb upstream 1.0kb upstream 6999 true Chr13: 18427751-18434749 Glycine max
Glyma.13G078400 1.0kb upstream 1.0kb upstream 1000 false Chr13: 18433750-18434749 Glycine max
Glyma.13G078400 1.0kb downstream 1.0kb downstream 6999 true Chr13: 18426751-18433749 Glycine max
Glyma.13G078400 1.0kb downstream 1.0kb downstream 1000 false Chr13: 18426751-18427750 Glycine max
Glyma.13G078400 2.0kb upstream 2.0kb upstream 7999 true Chr13: 18427751-18435749 Glycine max
Glyma.13G078400 2.0kb upstream 2.0kb upstream 2000 false Chr13: 18433750-18435749 Glycine max
Glyma.13G078400 2.0kb downstream 2.0kb downstream 7999 true Chr13: 18425751-18433749 Glycine max
Glyma.13G078400 2.0kb downstream 2.0kb downstream 2000 false Chr13: 18425751-18427750 Glycine max
Glyma.13G078400 5.0kb upstream 5.0kb upstream 10999 true Chr13: 18427751-18438749 Glycine max
Glyma.13G078400 5.0kb upstream 5.0kb upstream 5000 false Chr13: 18433750-18438749 Glycine max
Glyma.13G078400 5.0kb downstream 5.0kb downstream 10999 true Chr13: 18422751-18433749 Glycine max
Glyma.13G078400 5.0kb downstream 5.0kb downstream 5000 false Chr13: 18422751-18427750 Glycine max
Glyma.13G078400 10.0kb upstream 10.0kb upstream 15999 true Chr13: 18427751-18443749 Glycine max
Glyma.13G078400 10.0kb upstream 10.0kb upstream 10000 false Chr13: 18433750-18443749 Glycine max
Glyma.13G078400 10.0kb downstream 10.0kb downstream 15999 true Chr13: 18417751-18433749 Glycine max
Glyma.13G078400 10.0kb downstream 10.0kb downstream 10000 false Chr13: 18417751-18427750 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309423 5265 Fabidae View MSA
124067782 5270 Rosid View MSA
123744269 5271 Pentapetalae View MSA
122787506 5272 Eudicot View MSA
122048070 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121348979 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.0285 0.0 67.7469 High High
cufflinks 14.5734 0.0 38.8808    
cufflinks 6.77657 0.0 18.614    
cufflinks 11.1867 0.0 29.9547    
cufflinks 0.728442 0.0 2.60002   Low
cufflinks 1.0083 0.0 3.50318    
cufflinks 9.38608 0.0 25.3157    
cufflinks 6.16946 0.0 17.0825    
cufflinks 0.191085 0.0 0.731399 Low Low
cufflinks 5.087        
cufflinks 0.018     Low Low
cufflinks 4.46        
cufflinks 0.044     Low  
cufflinks 0.039     Low  
cufflinks 0.023     Low  
cufflinks 24.803     High High
cufflinks 0.079        
cufflinks 4.509        
cufflinks 8.346     High  
cufflinks 20.356     High High
cufflinks 0.004     Low Low
cufflinks 26.569     High High
cufflinks 21.989     High High
cufflinks 0.01     Low Low
cufflinks 30.026     High High
cufflinks 0.019     Low Low

0 Strain