Gene : Glyma.13G067700 G. max Wm82.a2.v1

Defline:  (1 of 3) PTHR13208 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4 Genomic Order:  677
Name:  ? Glyma.13G067700 Secondary Identifier:  ? PAC:30502158

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G067700 0.5kb upstream 0.5kb upstream 6507 true Chr13: 16752833-16759339 Glycine max
Glyma.13G067700 0.5kb upstream 0.5kb upstream 500 false Chr13: 16752833-16753332 Glycine max
Glyma.13G067700 0.5kb downstream 0.5kb downstream 6507 true Chr13: 16753333-16759839 Glycine max
Glyma.13G067700 0.5kb downstream 0.5kb downstream 500 false Chr13: 16759340-16759839 Glycine max
Glyma.13G067700 1.0kb upstream 1.0kb upstream 7007 true Chr13: 16752333-16759339 Glycine max
Glyma.13G067700 1.0kb upstream 1.0kb upstream 1000 false Chr13: 16752333-16753332 Glycine max
Glyma.13G067700 1.0kb downstream 1.0kb downstream 7007 true Chr13: 16753333-16760339 Glycine max
Glyma.13G067700 1.0kb downstream 1.0kb downstream 1000 false Chr13: 16759340-16760339 Glycine max
Glyma.13G067700 2.0kb upstream 2.0kb upstream 8007 true Chr13: 16751333-16759339 Glycine max
Glyma.13G067700 2.0kb upstream 2.0kb upstream 2000 false Chr13: 16751333-16753332 Glycine max
Glyma.13G067700 2.0kb downstream 2.0kb downstream 8007 true Chr13: 16753333-16761339 Glycine max
Glyma.13G067700 2.0kb downstream 2.0kb downstream 2000 false Chr13: 16759340-16761339 Glycine max
Glyma.13G067700 5.0kb upstream 5.0kb upstream 11007 true Chr13: 16748333-16759339 Glycine max
Glyma.13G067700 5.0kb upstream 5.0kb upstream 5000 false Chr13: 16748333-16753332 Glycine max
Glyma.13G067700 5.0kb downstream 5.0kb downstream 11007 true Chr13: 16753333-16764339 Glycine max
Glyma.13G067700 5.0kb downstream 5.0kb downstream 5000 false Chr13: 16759340-16764339 Glycine max
Glyma.13G067700 10.0kb upstream 10.0kb upstream 16007 true Chr13: 16743333-16759339 Glycine max
Glyma.13G067700 10.0kb upstream 10.0kb upstream 10000 false Chr13: 16743333-16753332 Glycine max
Glyma.13G067700 10.0kb downstream 10.0kb downstream 16007 true Chr13: 16753333-16769339 Glycine max
Glyma.13G067700 10.0kb downstream 10.0kb downstream 10000 false Chr13: 16759340-16769339 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315116 5265 Fabidae View MSA
124063104 5270 Rosid View MSA
123737443 5271 Pentapetalae View MSA
122786979 5272 Eudicot View MSA
122042269 5273 Angiosperm View MSA
121345208 5274 Embryophyte View MSA
123380175 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.84222 0.0 35.1897   High
cufflinks 5.59097 0.0 26.9099    
cufflinks 8.06815 0.0 36.7447   High
cufflinks 5.01588 0.0 26.865    
cufflinks 3.34029 0.0 18.4061    
cufflinks 2.39764 0.0 14.8025   Low
cufflinks 4.95822 0.0 23.7062    
cufflinks 2.90728 0.0 16.4187    
cufflinks 3.23101 0.0 15.4914    
cufflinks 0.266        
cufflinks 0.161       Low
cufflinks 0.801        
cufflinks 0.275        
cufflinks 0.307        
cufflinks 0.328        
cufflinks 0.828        
cufflinks 0.185       Low
cufflinks 1.249       High
cufflinks 0.674        
cufflinks 0.939       High
cufflinks 0.139       Low
cufflinks 0.949       High
cufflinks 0.873        
cufflinks 0.247        
cufflinks 0.895        
cufflinks 0.185       Low

0 Strain