Gene : Glyma.13G062700 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR12526:SF337 - STARCH SYNTHASE 2, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  627
Name:  ? Glyma.13G062700 Secondary Identifier:  ? PAC:30504356
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLYCOGENSYNTH-PWY Glycine max pathologic  
Gmax PWY-622 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G062700 0.5kb upstream 0.5kb upstream 15195 true Chr13: 16045152-16060346 Glycine max
Glyma.13G062700 0.5kb upstream 0.5kb upstream 500 false Chr13: 16059847-16060346 Glycine max
Glyma.13G062700 0.5kb downstream 0.5kb downstream 15195 true Chr13: 16044652-16059846 Glycine max
Glyma.13G062700 0.5kb downstream 0.5kb downstream 500 false Chr13: 16044652-16045151 Glycine max
Glyma.13G062700 1.0kb upstream 1.0kb upstream 15695 true Chr13: 16045152-16060846 Glycine max
Glyma.13G062700 1.0kb upstream 1.0kb upstream 1000 false Chr13: 16059847-16060846 Glycine max
Glyma.13G062700 1.0kb downstream 1.0kb downstream 15695 true Chr13: 16044152-16059846 Glycine max
Glyma.13G062700 1.0kb downstream 1.0kb downstream 1000 false Chr13: 16044152-16045151 Glycine max
Glyma.13G062700 2.0kb upstream 2.0kb upstream 16695 true Chr13: 16045152-16061846 Glycine max
Glyma.13G062700 2.0kb upstream 2.0kb upstream 2000 false Chr13: 16059847-16061846 Glycine max
Glyma.13G062700 2.0kb downstream 2.0kb downstream 16695 true Chr13: 16043152-16059846 Glycine max
Glyma.13G062700 2.0kb downstream 2.0kb downstream 2000 false Chr13: 16043152-16045151 Glycine max
Glyma.13G062700 5.0kb upstream 5.0kb upstream 19695 true Chr13: 16045152-16064846 Glycine max
Glyma.13G062700 5.0kb upstream 5.0kb upstream 5000 false Chr13: 16059847-16064846 Glycine max
Glyma.13G062700 5.0kb downstream 5.0kb downstream 19695 true Chr13: 16040152-16059846 Glycine max
Glyma.13G062700 5.0kb downstream 5.0kb downstream 5000 false Chr13: 16040152-16045151 Glycine max
Glyma.13G062700 10.0kb upstream 10.0kb upstream 24695 true Chr13: 16045152-16069846 Glycine max
Glyma.13G062700 10.0kb upstream 10.0kb upstream 10000 false Chr13: 16059847-16069846 Glycine max
Glyma.13G062700 10.0kb downstream 10.0kb downstream 24695 true Chr13: 16035152-16059846 Glycine max
Glyma.13G062700 10.0kb downstream 10.0kb downstream 10000 false Chr13: 16035152-16045151 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301456 5265 Fabidae View MSA
124066587 5270 Rosid View MSA
123744003 5271 Pentapetalae View MSA
122787814 5272 Eudicot View MSA
122042262 5273 Angiosperm View MSA
121347324 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.1417 0.0 58.1738   High
cufflinks 9.5673 0.0 25.5264    
cufflinks 5.66254 0.0 15.3224    
cufflinks 22.4 0.0 61.9957 High High
cufflinks 7.02829 0.0 18.8671    
cufflinks 4.82622 0.0 13.2157   Low
cufflinks 22.4226 0.0 61.9648 High High
cufflinks 5.34838 0.0 14.5376    
cufflinks 6.61365 0.0 17.7892    
cufflinks 2.662        
cufflinks 0.331       Low
cufflinks 3.202        
cufflinks 1.728        
cufflinks 1.697        
cufflinks 0.929        
cufflinks 3.379        
cufflinks 0.729        
cufflinks 4.119       High
cufflinks 3.291        
cufflinks 2.843        
cufflinks 0.464       Low
cufflinks 3.634        
cufflinks 4.205       High
cufflinks 0.354       Low
cufflinks 3.829        
cufflinks 0.923        

0 Strain