Gene : Glyma.13G055700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31680:SF4 - PROTEIN LONGIFOLIA 1-RELATED Genomic Order:  557
Name:  ? Glyma.13G055700 Secondary Identifier:  ? PAC:30502368
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G055700 0.5kb upstream 0.5kb upstream 7104 true Chr13: 15328624-15335727 Glycine max
Glyma.13G055700 0.5kb upstream 0.5kb upstream 500 false Chr13: 15328624-15329123 Glycine max
Glyma.13G055700 0.5kb downstream 0.5kb downstream 7104 true Chr13: 15329124-15336227 Glycine max
Glyma.13G055700 0.5kb downstream 0.5kb downstream 500 false Chr13: 15335728-15336227 Glycine max
Glyma.13G055700 1.0kb upstream 1.0kb upstream 7604 true Chr13: 15328124-15335727 Glycine max
Glyma.13G055700 1.0kb upstream 1.0kb upstream 1000 false Chr13: 15328124-15329123 Glycine max
Glyma.13G055700 1.0kb downstream 1.0kb downstream 7604 true Chr13: 15329124-15336727 Glycine max
Glyma.13G055700 1.0kb downstream 1.0kb downstream 1000 false Chr13: 15335728-15336727 Glycine max
Glyma.13G055700 2.0kb upstream 2.0kb upstream 8604 true Chr13: 15327124-15335727 Glycine max
Glyma.13G055700 2.0kb upstream 2.0kb upstream 2000 false Chr13: 15327124-15329123 Glycine max
Glyma.13G055700 2.0kb downstream 2.0kb downstream 8604 true Chr13: 15329124-15337727 Glycine max
Glyma.13G055700 2.0kb downstream 2.0kb downstream 2000 false Chr13: 15335728-15337727 Glycine max
Glyma.13G055700 5.0kb upstream 5.0kb upstream 11604 true Chr13: 15324124-15335727 Glycine max
Glyma.13G055700 5.0kb upstream 5.0kb upstream 5000 false Chr13: 15324124-15329123 Glycine max
Glyma.13G055700 5.0kb downstream 5.0kb downstream 11604 true Chr13: 15329124-15340727 Glycine max
Glyma.13G055700 5.0kb downstream 5.0kb downstream 5000 false Chr13: 15335728-15340727 Glycine max
Glyma.13G055700 10.0kb upstream 10.0kb upstream 16604 true Chr13: 15319124-15335727 Glycine max
Glyma.13G055700 10.0kb upstream 10.0kb upstream 10000 false Chr13: 15319124-15329123 Glycine max
Glyma.13G055700 10.0kb downstream 10.0kb downstream 16604 true Chr13: 15329124-15345727 Glycine max
Glyma.13G055700 10.0kb downstream 10.0kb downstream 10000 false Chr13: 15335728-15345727 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026676 5273 Angiosperm View MSA
122297767 5265 Fabidae View MSA
124036142 5270 Rosid View MSA
123746189 5271 Pentapetalae View MSA
122771811 5272 Eudicot View MSA
121350314 5274 Embryophyte View MSA
123381675 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.3828 0.0 5.40045    
cufflinks 1.84257 0.0 7.61404    
cufflinks 0.664541 0.0 3.17655    
cufflinks 0.312842 0.0 1.77624   Low
cufflinks 2.56241 0.0 11.1834   High
cufflinks 2.09536 0.0 7.33831    
cufflinks 1.15128 0.0 4.68561    
cufflinks 0.46213 0.0 2.46981   Low
cufflinks 1.11393 0.0 5.74669    
cufflinks 1.207        
cufflinks 0.121        
cufflinks 0.472        
cufflinks 1.478        
cufflinks 1.726        
cufflinks 0.005     Low Low
cufflinks 2.29        
cufflinks 0.051     Low Low
cufflinks 3.565       High
cufflinks 0.607        
cufflinks 3.077        
cufflinks 0.147        
cufflinks 3.201        
cufflinks 1.673        
cufflinks 0.317        
cufflinks 2.188        
cufflinks 0.114        

0 Strain