Gene : Glyma.13G088300 G. max Wm82.a2.v1
Defline:  (1 of 7) PTHR10788:SF25 - TREHALOSE-PHOSPHATE PHOSPHATASE D-RELATED Genomic Order:  883
Name:  ? Glyma.13G088300 Secondary Identifier:  ? PAC:30505469
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G088300 0.5kb upstream 0.5kb upstream 3496 true Chr13: 20202192-20205687 Glycine max
Glyma.13G088300 0.5kb upstream 0.5kb upstream 500 false Chr13: 20205188-20205687 Glycine max
Glyma.13G088300 0.5kb downstream 0.5kb downstream 3496 true Chr13: 20201692-20205187 Glycine max
Glyma.13G088300 0.5kb downstream 0.5kb downstream 500 false Chr13: 20201692-20202191 Glycine max
Glyma.13G088300 1.0kb upstream 1.0kb upstream 3996 true Chr13: 20202192-20206187 Glycine max
Glyma.13G088300 1.0kb upstream 1.0kb upstream 1000 false Chr13: 20205188-20206187 Glycine max
Glyma.13G088300 1.0kb downstream 1.0kb downstream 3996 true Chr13: 20201192-20205187 Glycine max
Glyma.13G088300 1.0kb downstream 1.0kb downstream 1000 false Chr13: 20201192-20202191 Glycine max
Glyma.13G088300 2.0kb upstream 2.0kb upstream 4996 true Chr13: 20202192-20207187 Glycine max
Glyma.13G088300 2.0kb upstream 2.0kb upstream 2000 false Chr13: 20205188-20207187 Glycine max
Glyma.13G088300 2.0kb downstream 2.0kb downstream 4996 true Chr13: 20200192-20205187 Glycine max
Glyma.13G088300 2.0kb downstream 2.0kb downstream 2000 false Chr13: 20200192-20202191 Glycine max
Glyma.13G088300 5.0kb upstream 5.0kb upstream 7996 true Chr13: 20202192-20210187 Glycine max
Glyma.13G088300 5.0kb upstream 5.0kb upstream 5000 false Chr13: 20205188-20210187 Glycine max
Glyma.13G088300 5.0kb downstream 5.0kb downstream 7996 true Chr13: 20197192-20205187 Glycine max
Glyma.13G088300 5.0kb downstream 5.0kb downstream 5000 false Chr13: 20197192-20202191 Glycine max
Glyma.13G088300 10.0kb upstream 10.0kb upstream 12996 true Chr13: 20202192-20215187 Glycine max
Glyma.13G088300 10.0kb upstream 10.0kb upstream 10000 false Chr13: 20205188-20215187 Glycine max
Glyma.13G088300 10.0kb downstream 10.0kb downstream 12996 true Chr13: 20192192-20205187 Glycine max
Glyma.13G088300 10.0kb downstream 10.0kb downstream 10000 false Chr13: 20192192-20202191 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297464 5265 Fabidae View MSA
124069564 5270 Rosid View MSA
123746966 5271 Pentapetalae View MSA
122786046 5272 Eudicot View MSA
122042129 5273 Angiosperm View MSA
121351669 5274 Embryophyte View MSA
123427869 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.579666 0.0 3.6643    
cufflinks 1.36713 0.0 7.47853    
cufflinks 2.41586 0.0 10.8351    
cufflinks 0.161034 0.0 0.628374 Low Low
cufflinks 1.59455 0.0 8.34515    
cufflinks 0.927818 0.0 4.01311    
cufflinks 0.0445729 0.0 0.183822 Low Low
cufflinks 1.81099 0.0 8.93397    
cufflinks 3.49328 0.0 14.1437   High
cufflinks 8.779     High  
cufflinks 11.269     High  
cufflinks 2.397        
cufflinks 2.142        
cufflinks 0.274       Low
cufflinks 1.282        
cufflinks 0.602        
cufflinks 81.212     High High
cufflinks 3.494        
cufflinks 0.894        
cufflinks 0.456       Low
cufflinks 5.782     High  
cufflinks 0.492        
cufflinks 0.351       Low
cufflinks 9.107     High  
cufflinks 0.71        
cufflinks 16.945     High High

0 Strain