Gene : Glyma.13G089100 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR23160:SF3 - SYNAPTONEMAL COMPLEX PROTEIN 1-RELATED Genomic Order:  891
Name:  ? Glyma.13G089100 Secondary Identifier:  ? PAC:30500163
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G089100 0.5kb upstream 0.5kb upstream 17928 true Chr13: 20342068-20359995 Glycine max
Glyma.13G089100 0.5kb upstream 0.5kb upstream 500 false Chr13: 20359496-20359995 Glycine max
Glyma.13G089100 0.5kb downstream 0.5kb downstream 17928 true Chr13: 20341568-20359495 Glycine max
Glyma.13G089100 0.5kb downstream 0.5kb downstream 500 false Chr13: 20341568-20342067 Glycine max
Glyma.13G089100 1.0kb upstream 1.0kb upstream 18428 true Chr13: 20342068-20360495 Glycine max
Glyma.13G089100 1.0kb upstream 1.0kb upstream 1000 false Chr13: 20359496-20360495 Glycine max
Glyma.13G089100 1.0kb downstream 1.0kb downstream 18428 true Chr13: 20341068-20359495 Glycine max
Glyma.13G089100 1.0kb downstream 1.0kb downstream 1000 false Chr13: 20341068-20342067 Glycine max
Glyma.13G089100 2.0kb upstream 2.0kb upstream 19428 true Chr13: 20342068-20361495 Glycine max
Glyma.13G089100 2.0kb upstream 2.0kb upstream 2000 false Chr13: 20359496-20361495 Glycine max
Glyma.13G089100 2.0kb downstream 2.0kb downstream 19428 true Chr13: 20340068-20359495 Glycine max
Glyma.13G089100 2.0kb downstream 2.0kb downstream 2000 false Chr13: 20340068-20342067 Glycine max
Glyma.13G089100 5.0kb upstream 5.0kb upstream 22428 true Chr13: 20342068-20364495 Glycine max
Glyma.13G089100 5.0kb upstream 5.0kb upstream 5000 false Chr13: 20359496-20364495 Glycine max
Glyma.13G089100 5.0kb downstream 5.0kb downstream 22428 true Chr13: 20337068-20359495 Glycine max
Glyma.13G089100 5.0kb downstream 5.0kb downstream 5000 false Chr13: 20337068-20342067 Glycine max
Glyma.13G089100 10.0kb upstream 10.0kb upstream 27428 true Chr13: 20342068-20369495 Glycine max
Glyma.13G089100 10.0kb upstream 10.0kb upstream 10000 false Chr13: 20359496-20369495 Glycine max
Glyma.13G089100 10.0kb downstream 10.0kb downstream 27428 true Chr13: 20332068-20359495 Glycine max
Glyma.13G089100 10.0kb downstream 10.0kb downstream 10000 false Chr13: 20332068-20342067 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302115 5265 Fabidae View MSA
124068908 5270 Rosid View MSA
123737284 5271 Pentapetalae View MSA
122789700 5272 Eudicot View MSA
122042808 5273 Angiosperm View MSA
121349481 5274 Embryophyte View MSA
123381327 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.328884 0.0 1.4906   High
cufflinks 0.266649 0.0 1.23426   High
cufflinks 0.173735 0.0 1.12341 Low  
cufflinks 0.12706 0.0 0.994058 Low  
cufflinks 0.0305732 0.0 0.12329 Low Low
cufflinks 0.0559486 0.0 0.220839 Low  
cufflinks 0.103018 0.0 0.518318 Low  
cufflinks 0.176745 0.0 0.852777 Low  
cufflinks 0.0421179 0.0 0.168136 Low Low
cufflinks 0.04     Low  
cufflinks 0.007     Low  
cufflinks 0.07     Low High
cufflinks 0.008     Low  
cufflinks 0.003     Low Low
cufflinks 0.069       High
cufflinks 0.048     Low  
cufflinks 0.004     Low Low
cufflinks 0.036     Low  
cufflinks 0.051     Low  
cufflinks 0.032     Low  
cufflinks 0.008     Low  
cufflinks 0.048     Low  
cufflinks 0.075     Low High
cufflinks 0.008     Low  
cufflinks 0.045     Low  
cufflinks 0.005     Low Low

0 Strain