Gene : Glyma.13G089200 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR11455:SF24 - CRYPTOCHROME-1 Genomic Order:  892
Name:  ? Glyma.13G089200 Secondary Identifier:  ? PAC:30502579
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Ontology Annotation Displayer

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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G089200 0.5kb upstream 0.5kb upstream 6359 true Chr13: 20370493-20376851 Glycine max
Glyma.13G089200 0.5kb upstream 0.5kb upstream 500 false Chr13: 20370493-20370992 Glycine max
Glyma.13G089200 0.5kb downstream 0.5kb downstream 6359 true Chr13: 20370993-20377351 Glycine max
Glyma.13G089200 0.5kb downstream 0.5kb downstream 500 false Chr13: 20376852-20377351 Glycine max
Glyma.13G089200 1.0kb upstream 1.0kb upstream 6859 true Chr13: 20369993-20376851 Glycine max
Glyma.13G089200 1.0kb upstream 1.0kb upstream 1000 false Chr13: 20369993-20370992 Glycine max
Glyma.13G089200 1.0kb downstream 1.0kb downstream 6859 true Chr13: 20370993-20377851 Glycine max
Glyma.13G089200 1.0kb downstream 1.0kb downstream 1000 false Chr13: 20376852-20377851 Glycine max
Glyma.13G089200 2.0kb upstream 2.0kb upstream 7859 true Chr13: 20368993-20376851 Glycine max
Glyma.13G089200 2.0kb upstream 2.0kb upstream 2000 false Chr13: 20368993-20370992 Glycine max
Glyma.13G089200 2.0kb downstream 2.0kb downstream 7859 true Chr13: 20370993-20378851 Glycine max
Glyma.13G089200 2.0kb downstream 2.0kb downstream 2000 false Chr13: 20376852-20378851 Glycine max
Glyma.13G089200 5.0kb upstream 5.0kb upstream 10859 true Chr13: 20365993-20376851 Glycine max
Glyma.13G089200 5.0kb upstream 5.0kb upstream 5000 false Chr13: 20365993-20370992 Glycine max
Glyma.13G089200 5.0kb downstream 5.0kb downstream 10859 true Chr13: 20370993-20381851 Glycine max
Glyma.13G089200 5.0kb downstream 5.0kb downstream 5000 false Chr13: 20376852-20381851 Glycine max
Glyma.13G089200 10.0kb upstream 10.0kb upstream 15859 true Chr13: 20360993-20376851 Glycine max
Glyma.13G089200 10.0kb upstream 10.0kb upstream 10000 false Chr13: 20360993-20370992 Glycine max
Glyma.13G089200 10.0kb downstream 10.0kb downstream 15859 true Chr13: 20370993-20386851 Glycine max
Glyma.13G089200 10.0kb downstream 10.0kb downstream 10000 false Chr13: 20376852-20386851 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314673 5265 Fabidae View MSA
124068248 5270 Rosid View MSA
123736970 5271 Pentapetalae View MSA
122788964 5272 Eudicot View MSA
122048329 5273 Angiosperm View MSA
121343845 5274 Embryophyte View MSA
123428792 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.4112 0.0 77.9321 High High
cufflinks 6.73075 0.0 23.3343    
cufflinks 6.86067 0.0 23.7767    
cufflinks 4.06632 0.0 15.0091    
cufflinks 1.38813 0.0 6.02483   Low
cufflinks 1.8663 0.0 7.4079    
cufflinks 0.961784 0.0 4.68066   Low
cufflinks 11.7297 0.0 40.6101   High
cufflinks 2.62299 0.0 9.32614    
cufflinks 4.951        
cufflinks 0.132       Low
cufflinks 2.678        
cufflinks 0.286        
cufflinks 0.047     Low Low
cufflinks 0.249        
cufflinks 11.122     High High
cufflinks 0.559        
cufflinks 1.384        
cufflinks 3.401        
cufflinks 7.883     High High
cufflinks 0.075       Low
cufflinks 10.486     High High
cufflinks 6.617        
cufflinks 0.148        
cufflinks 11.183     High High
cufflinks 0.123       Low

0 Strain