Gene : Glyma.13G089700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10108:SF899 - PECTIN METHYLTRANSFERASE QUA2-RELATED Genomic Order:  897
Name:  ? Glyma.13G089700 Secondary Identifier:  ? PAC:30506051
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G089700 0.5kb upstream 0.5kb upstream 7328 true Chr13: 20413235-20420562 Glycine max
Glyma.13G089700 0.5kb upstream 0.5kb upstream 500 false Chr13: 20420063-20420562 Glycine max
Glyma.13G089700 0.5kb downstream 0.5kb downstream 7328 true Chr13: 20412735-20420062 Glycine max
Glyma.13G089700 0.5kb downstream 0.5kb downstream 500 false Chr13: 20412735-20413234 Glycine max
Glyma.13G089700 1.0kb upstream 1.0kb upstream 7828 true Chr13: 20413235-20421062 Glycine max
Glyma.13G089700 1.0kb upstream 1.0kb upstream 1000 false Chr13: 20420063-20421062 Glycine max
Glyma.13G089700 1.0kb downstream 1.0kb downstream 7828 true Chr13: 20412235-20420062 Glycine max
Glyma.13G089700 1.0kb downstream 1.0kb downstream 1000 false Chr13: 20412235-20413234 Glycine max
Glyma.13G089700 2.0kb upstream 2.0kb upstream 8828 true Chr13: 20413235-20422062 Glycine max
Glyma.13G089700 2.0kb upstream 2.0kb upstream 2000 false Chr13: 20420063-20422062 Glycine max
Glyma.13G089700 2.0kb downstream 2.0kb downstream 8828 true Chr13: 20411235-20420062 Glycine max
Glyma.13G089700 2.0kb downstream 2.0kb downstream 2000 false Chr13: 20411235-20413234 Glycine max
Glyma.13G089700 5.0kb upstream 5.0kb upstream 11828 true Chr13: 20413235-20425062 Glycine max
Glyma.13G089700 5.0kb upstream 5.0kb upstream 5000 false Chr13: 20420063-20425062 Glycine max
Glyma.13G089700 5.0kb downstream 5.0kb downstream 11828 true Chr13: 20408235-20420062 Glycine max
Glyma.13G089700 5.0kb downstream 5.0kb downstream 5000 false Chr13: 20408235-20413234 Glycine max
Glyma.13G089700 10.0kb upstream 10.0kb upstream 16828 true Chr13: 20413235-20430062 Glycine max
Glyma.13G089700 10.0kb upstream 10.0kb upstream 10000 false Chr13: 20420063-20430062 Glycine max
Glyma.13G089700 10.0kb downstream 10.0kb downstream 16828 true Chr13: 20403235-20420062 Glycine max
Glyma.13G089700 10.0kb downstream 10.0kb downstream 10000 false Chr13: 20403235-20413234 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309975 5265 Fabidae View MSA
124068394 5270 Rosid View MSA
123753010 5271 Pentapetalae View MSA
122796119 5272 Eudicot View MSA
122048389 5273 Angiosperm View MSA
121346192 5274 Embryophyte View MSA
123380346 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.3143 0.0 55.1345    
cufflinks 2.71667 0.0 9.68131   Low
cufflinks 26.1334 0.0 104.373 High High
cufflinks 22.2134 0.0 84.2563 High  
cufflinks 11.6654 0.0 40.2465    
cufflinks 14.5221 0.0 44.477    
cufflinks 5.26477 0.0 16.9966   Low
cufflinks 12.5073 0.0 43.7146    
cufflinks 11.5154 0.0 40.2668    
cufflinks 8.336     High  
cufflinks 9.728     High  
cufflinks 10.208     High  
cufflinks 7.93     High  
cufflinks 5.193        
cufflinks 2.128        
cufflinks 2.794        
cufflinks 26.832     High High
cufflinks 5.019        
cufflinks 1.029       Low
cufflinks 2.226        
cufflinks 19.527     High High
cufflinks 3.052        
cufflinks 2.158        
cufflinks 13.084     High  
cufflinks 2.334        
cufflinks 33.609     High High

0 Strain