Gene : Glyma.13G090900 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR11387:SF15 - CYTOCHROME C OXIDASE SUBUNIT 6B-1 Genomic Order:  909
Name:  ? Glyma.13G090900 Secondary Identifier:  ? PAC:30503416
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-3781 Glycine max pathologic  
Gmax PWY-7279 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G090900 0.5kb upstream 0.5kb upstream 4216 true Chr13: 20569084-20573299 Glycine max
Glyma.13G090900 0.5kb upstream 0.5kb upstream 500 false Chr13: 20569084-20569583 Glycine max
Glyma.13G090900 0.5kb downstream 0.5kb downstream 4216 true Chr13: 20569584-20573799 Glycine max
Glyma.13G090900 0.5kb downstream 0.5kb downstream 500 false Chr13: 20573300-20573799 Glycine max
Glyma.13G090900 1.0kb upstream 1.0kb upstream 4716 true Chr13: 20568584-20573299 Glycine max
Glyma.13G090900 1.0kb upstream 1.0kb upstream 1000 false Chr13: 20568584-20569583 Glycine max
Glyma.13G090900 1.0kb downstream 1.0kb downstream 4716 true Chr13: 20569584-20574299 Glycine max
Glyma.13G090900 1.0kb downstream 1.0kb downstream 1000 false Chr13: 20573300-20574299 Glycine max
Glyma.13G090900 2.0kb upstream 2.0kb upstream 5716 true Chr13: 20567584-20573299 Glycine max
Glyma.13G090900 2.0kb upstream 2.0kb upstream 2000 false Chr13: 20567584-20569583 Glycine max
Glyma.13G090900 2.0kb downstream 2.0kb downstream 5716 true Chr13: 20569584-20575299 Glycine max
Glyma.13G090900 2.0kb downstream 2.0kb downstream 2000 false Chr13: 20573300-20575299 Glycine max
Glyma.13G090900 5.0kb upstream 5.0kb upstream 8716 true Chr13: 20564584-20573299 Glycine max
Glyma.13G090900 5.0kb upstream 5.0kb upstream 5000 false Chr13: 20564584-20569583 Glycine max
Glyma.13G090900 5.0kb downstream 5.0kb downstream 8716 true Chr13: 20569584-20578299 Glycine max
Glyma.13G090900 5.0kb downstream 5.0kb downstream 5000 false Chr13: 20573300-20578299 Glycine max
Glyma.13G090900 10.0kb upstream 10.0kb upstream 13716 true Chr13: 20559584-20573299 Glycine max
Glyma.13G090900 10.0kb upstream 10.0kb upstream 10000 false Chr13: 20559584-20569583 Glycine max
Glyma.13G090900 10.0kb downstream 10.0kb downstream 13716 true Chr13: 20569584-20583299 Glycine max
Glyma.13G090900 10.0kb downstream 10.0kb downstream 10000 false Chr13: 20573300-20583299 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309733 5265 Fabidae View MSA
124068898 5270 Rosid View MSA
123741112 5271 Pentapetalae View MSA
122785907 5272 Eudicot View MSA
122042170 5273 Angiosperm View MSA
121351047 5274 Embryophyte View MSA
123424784 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.8157 0.0 119.614 High  
cufflinks 43.5793 0.0 116.329 High  
cufflinks 52.9449 0.0 141.363 High  
cufflinks 32.3669 0.0 86.9845 High Low
cufflinks 103.337 0.0 284.02 High  
cufflinks 234.34 0.0 715.579 High High
cufflinks 37.8282 0.0 101.271 High  
cufflinks 68.5346 0.0 184.147 High  
cufflinks 99.6948 0.0 273.696 High  
cufflinks 9.174     High  
cufflinks 11.276     High  
cufflinks 5.658        
cufflinks 19.433     High High
cufflinks 19.374     High High
cufflinks 6.446     High  
cufflinks 5.356        
cufflinks 6.63     High  
cufflinks 8.239     High  
cufflinks 5.254        
cufflinks 4.812       Low
cufflinks 10.397     High  
cufflinks 4.896        
cufflinks 4.052       Low
cufflinks 13.512     High High
cufflinks 5.175        
cufflinks 10.665     High  

0 Strain