Gene : Glyma.13G116700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR13683:SF296 - ASPARTYL PROTEASE FAMILY PROTEIN Genomic Order:  1167
Name:  ? Glyma.13G116700 Secondary Identifier:  ? PAC:30502466
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G116700 0.5kb upstream 0.5kb upstream 4665 true Chr13: 22995921-23000585 Glycine max
Glyma.13G116700 0.5kb upstream 0.5kb upstream 500 false Chr13: 23000086-23000585 Glycine max
Glyma.13G116700 0.5kb downstream 0.5kb downstream 4665 true Chr13: 22995421-23000085 Glycine max
Glyma.13G116700 0.5kb downstream 0.5kb downstream 500 false Chr13: 22995421-22995920 Glycine max
Glyma.13G116700 1.0kb upstream 1.0kb upstream 5165 true Chr13: 22995921-23001085 Glycine max
Glyma.13G116700 1.0kb upstream 1.0kb upstream 1000 false Chr13: 23000086-23001085 Glycine max
Glyma.13G116700 1.0kb downstream 1.0kb downstream 5165 true Chr13: 22994921-23000085 Glycine max
Glyma.13G116700 1.0kb downstream 1.0kb downstream 1000 false Chr13: 22994921-22995920 Glycine max
Glyma.13G116700 2.0kb upstream 2.0kb upstream 6165 true Chr13: 22995921-23002085 Glycine max
Glyma.13G116700 2.0kb upstream 2.0kb upstream 2000 false Chr13: 23000086-23002085 Glycine max
Glyma.13G116700 2.0kb downstream 2.0kb downstream 6165 true Chr13: 22993921-23000085 Glycine max
Glyma.13G116700 2.0kb downstream 2.0kb downstream 2000 false Chr13: 22993921-22995920 Glycine max
Glyma.13G116700 5.0kb upstream 5.0kb upstream 9165 true Chr13: 22995921-23005085 Glycine max
Glyma.13G116700 5.0kb upstream 5.0kb upstream 5000 false Chr13: 23000086-23005085 Glycine max
Glyma.13G116700 5.0kb downstream 5.0kb downstream 9165 true Chr13: 22990921-23000085 Glycine max
Glyma.13G116700 5.0kb downstream 5.0kb downstream 5000 false Chr13: 22990921-22995920 Glycine max
Glyma.13G116700 10.0kb upstream 10.0kb upstream 14165 true Chr13: 22995921-23010085 Glycine max
Glyma.13G116700 10.0kb upstream 10.0kb upstream 10000 false Chr13: 23000086-23010085 Glycine max
Glyma.13G116700 10.0kb downstream 10.0kb downstream 14165 true Chr13: 22985921-23000085 Glycine max
Glyma.13G116700 10.0kb downstream 10.0kb downstream 10000 false Chr13: 22985921-22995920 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780043 5273 Angiosperm View MSA
122311661 5265 Fabidae View MSA
124071121 5270 Rosid View MSA
123744877 5271 Pentapetalae View MSA
122771281 5272 Eudicot View MSA
121051677 5274 Embryophyte View MSA
123428778 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.398051 0.0 2.53119   Low
cufflinks 1.50682 0.0 7.51072    
cufflinks 2.3821 0.0 10.1687    
cufflinks 13.3516 0.0 41.4141   High
cufflinks 0.22481 0.0 1.1055 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 9.062 0.0 28.6019   High
cufflinks 7.02466 0.0 22.5035    
cufflinks 1.27261 0.0 6.62981    
cufflinks 4.442       High
cufflinks 0.004     Low Low
cufflinks 0.278        
cufflinks 0.004     Low Low
cufflinks 0.009     Low  
cufflinks 0.036     Low  
cufflinks 0.197        
cufflinks 0.054     Low  
cufflinks 0.472        
cufflinks 1.345       High
cufflinks 0.328        
cufflinks 0.01     Low  
cufflinks 0.43        
cufflinks 3.541       High
cufflinks 0.003     Low Low
cufflinks 0.363        
cufflinks 0.008     Low  

0 Strain