Gene : Glyma.13G116300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12668:SF5 - UPF0136 MEMBRANE PROTEIN YJR085C Genomic Order:  1163
Name:  ? Glyma.13G116300 Secondary Identifier:  ? PAC:30500622
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G116300 0.5kb upstream 0.5kb upstream 3203 true Chr13: 22969740-22972942 Glycine max
Glyma.13G116300 0.5kb upstream 0.5kb upstream 500 false Chr13: 22972443-22972942 Glycine max
Glyma.13G116300 0.5kb downstream 0.5kb downstream 3203 true Chr13: 22969240-22972442 Glycine max
Glyma.13G116300 0.5kb downstream 0.5kb downstream 500 false Chr13: 22969240-22969739 Glycine max
Glyma.13G116300 1.0kb upstream 1.0kb upstream 3703 true Chr13: 22969740-22973442 Glycine max
Glyma.13G116300 1.0kb upstream 1.0kb upstream 1000 false Chr13: 22972443-22973442 Glycine max
Glyma.13G116300 1.0kb downstream 1.0kb downstream 3703 true Chr13: 22968740-22972442 Glycine max
Glyma.13G116300 1.0kb downstream 1.0kb downstream 1000 false Chr13: 22968740-22969739 Glycine max
Glyma.13G116300 2.0kb upstream 2.0kb upstream 4703 true Chr13: 22969740-22974442 Glycine max
Glyma.13G116300 2.0kb upstream 2.0kb upstream 2000 false Chr13: 22972443-22974442 Glycine max
Glyma.13G116300 2.0kb downstream 2.0kb downstream 4703 true Chr13: 22967740-22972442 Glycine max
Glyma.13G116300 2.0kb downstream 2.0kb downstream 2000 false Chr13: 22967740-22969739 Glycine max
Glyma.13G116300 5.0kb upstream 5.0kb upstream 7703 true Chr13: 22969740-22977442 Glycine max
Glyma.13G116300 5.0kb upstream 5.0kb upstream 5000 false Chr13: 22972443-22977442 Glycine max
Glyma.13G116300 5.0kb downstream 5.0kb downstream 7703 true Chr13: 22964740-22972442 Glycine max
Glyma.13G116300 5.0kb downstream 5.0kb downstream 5000 false Chr13: 22964740-22969739 Glycine max
Glyma.13G116300 10.0kb upstream 10.0kb upstream 12703 true Chr13: 22969740-22982442 Glycine max
Glyma.13G116300 10.0kb upstream 10.0kb upstream 10000 false Chr13: 22972443-22982442 Glycine max
Glyma.13G116300 10.0kb downstream 10.0kb downstream 12703 true Chr13: 22959740-22972442 Glycine max
Glyma.13G116300 10.0kb downstream 10.0kb downstream 10000 false Chr13: 22959740-22969739 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305664 5265 Fabidae View MSA
124067619 5270 Rosid View MSA
123736820 5271 Pentapetalae View MSA
122786957 5272 Eudicot View MSA
122047216 5273 Angiosperm View MSA
121351322 5274 Embryophyte View MSA
123426664 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 65.5312 0.0 180.776 High  
cufflinks 73.9758 0.0 206.305 High  
cufflinks 38.9938 0.0 104.42 High Low
cufflinks 48.5599 0.0 131.222 High Low
cufflinks 99.2561 0.0 287.726 High  
cufflinks 77.5327 0.0 217.507 High  
cufflinks 147.222 0.0 452.955 High High
cufflinks 60.7421 0.0 166.494 High  
cufflinks 103.352 0.0 300.747 High  
cufflinks 24.534     High  
cufflinks 14.769     High  
cufflinks 20.211     High  
cufflinks 35.633     High High
cufflinks 47.179     High High
cufflinks 30.228     High  
cufflinks 20.691     High  
cufflinks 10.446     High Low
cufflinks 25.182     High  
cufflinks 28.006     High  
cufflinks 20.858     High  
cufflinks 15.932     High  
cufflinks 21.409     High  
cufflinks 22.505     High  
cufflinks 12.568     High Low
cufflinks 20.953     High  
cufflinks 16.491     High  

0 Strain