Gene : Glyma.13G134500 G. max Wm82.a2.v1
Defline:  (1 of 3) PF04571//PF08235//PF16876 - lipin, N-terminal conserved region (Lipin_N) // LNS2 (Lipin/Ned1/Smp2) (LNS2) // Lipin/Ned1/Smp2 multi-domain protein middle domain (Lipin_mid) Genomic Order:  1345
Name:  ? Glyma.13G134500 Secondary Identifier:  ? PAC:30505400
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRIGLSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G134500 0.5kb upstream 0.5kb upstream 9460 true Chr13: 24696109-24705568 Glycine max
Glyma.13G134500 0.5kb upstream 0.5kb upstream 500 false Chr13: 24705069-24705568 Glycine max
Glyma.13G134500 0.5kb downstream 0.5kb downstream 9460 true Chr13: 24695609-24705068 Glycine max
Glyma.13G134500 0.5kb downstream 0.5kb downstream 500 false Chr13: 24695609-24696108 Glycine max
Glyma.13G134500 1.0kb upstream 1.0kb upstream 9960 true Chr13: 24696109-24706068 Glycine max
Glyma.13G134500 1.0kb upstream 1.0kb upstream 1000 false Chr13: 24705069-24706068 Glycine max
Glyma.13G134500 1.0kb downstream 1.0kb downstream 9960 true Chr13: 24695109-24705068 Glycine max
Glyma.13G134500 1.0kb downstream 1.0kb downstream 1000 false Chr13: 24695109-24696108 Glycine max
Glyma.13G134500 2.0kb upstream 2.0kb upstream 10960 true Chr13: 24696109-24707068 Glycine max
Glyma.13G134500 2.0kb upstream 2.0kb upstream 2000 false Chr13: 24705069-24707068 Glycine max
Glyma.13G134500 2.0kb downstream 2.0kb downstream 10960 true Chr13: 24694109-24705068 Glycine max
Glyma.13G134500 2.0kb downstream 2.0kb downstream 2000 false Chr13: 24694109-24696108 Glycine max
Glyma.13G134500 5.0kb upstream 5.0kb upstream 13960 true Chr13: 24696109-24710068 Glycine max
Glyma.13G134500 5.0kb upstream 5.0kb upstream 5000 false Chr13: 24705069-24710068 Glycine max
Glyma.13G134500 5.0kb downstream 5.0kb downstream 13960 true Chr13: 24691109-24705068 Glycine max
Glyma.13G134500 5.0kb downstream 5.0kb downstream 5000 false Chr13: 24691109-24696108 Glycine max
Glyma.13G134500 10.0kb upstream 10.0kb upstream 18960 true Chr13: 24696109-24715068 Glycine max
Glyma.13G134500 10.0kb upstream 10.0kb upstream 10000 false Chr13: 24705069-24715068 Glycine max
Glyma.13G134500 10.0kb downstream 10.0kb downstream 18960 true Chr13: 24686109-24705068 Glycine max
Glyma.13G134500 10.0kb downstream 10.0kb downstream 10000 false Chr13: 24686109-24696108 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311900 5265 Fabidae View MSA
124065604 5270 Rosid View MSA
123741487 5271 Pentapetalae View MSA
122792824 5272 Eudicot View MSA
122048354 5273 Angiosperm View MSA
121350822 5274 Embryophyte View MSA
123381897 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.3497 0.0 44.7452   High
cufflinks 2.88552 0.0 9.57731    
cufflinks 6.47633 0.0 24.9788    
cufflinks 3.17032 0.0 14.165    
cufflinks 6.39806 0.0 25.288    
cufflinks 6.75484 0.0 20.2384    
cufflinks 2.76206 0.0 9.38615   Low
cufflinks 2.49292 0.0 8.59576   Low
cufflinks 7.22971 0.0 21.6042    
cufflinks 1.531        
cufflinks 3.691        
cufflinks 3.241        
cufflinks 3.804       High
cufflinks 2.52        
cufflinks 3.829       High
cufflinks 1.404       Low
cufflinks 2.101        
cufflinks 2.855        
cufflinks 1.723        
cufflinks 1.237       Low
cufflinks 4.494       High
cufflinks 1.562        
cufflinks 1.917        
cufflinks 4.126       High
cufflinks 1.126       Low
cufflinks 3.321        

0 Strain