Gene : Glyma.13G128600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR15039:SF11 - DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY PROTEIN Genomic Order:  1286
Name:  ? Glyma.13G128600 Secondary Identifier:  ? PAC:30500921
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G128600 0.5kb upstream 0.5kb upstream 2500 true Chr13: 24140803-24143302 Glycine max
Glyma.13G128600 0.5kb upstream 0.5kb upstream 500 false Chr13: 24142803-24143302 Glycine max
Glyma.13G128600 0.5kb downstream 0.5kb downstream 2500 true Chr13: 24140303-24142802 Glycine max
Glyma.13G128600 0.5kb downstream 0.5kb downstream 500 false Chr13: 24140303-24140802 Glycine max
Glyma.13G128600 1.0kb upstream 1.0kb upstream 3000 true Chr13: 24140803-24143802 Glycine max
Glyma.13G128600 1.0kb upstream 1.0kb upstream 1000 false Chr13: 24142803-24143802 Glycine max
Glyma.13G128600 1.0kb downstream 1.0kb downstream 3000 true Chr13: 24139803-24142802 Glycine max
Glyma.13G128600 1.0kb downstream 1.0kb downstream 1000 false Chr13: 24139803-24140802 Glycine max
Glyma.13G128600 2.0kb upstream 2.0kb upstream 4000 true Chr13: 24140803-24144802 Glycine max
Glyma.13G128600 2.0kb upstream 2.0kb upstream 2000 false Chr13: 24142803-24144802 Glycine max
Glyma.13G128600 2.0kb downstream 2.0kb downstream 4000 true Chr13: 24138803-24142802 Glycine max
Glyma.13G128600 2.0kb downstream 2.0kb downstream 2000 false Chr13: 24138803-24140802 Glycine max
Glyma.13G128600 5.0kb upstream 5.0kb upstream 7000 true Chr13: 24140803-24147802 Glycine max
Glyma.13G128600 5.0kb upstream 5.0kb upstream 5000 false Chr13: 24142803-24147802 Glycine max
Glyma.13G128600 5.0kb downstream 5.0kb downstream 7000 true Chr13: 24135803-24142802 Glycine max
Glyma.13G128600 5.0kb downstream 5.0kb downstream 5000 false Chr13: 24135803-24140802 Glycine max
Glyma.13G128600 10.0kb upstream 10.0kb upstream 12000 true Chr13: 24140803-24152802 Glycine max
Glyma.13G128600 10.0kb upstream 10.0kb upstream 10000 false Chr13: 24142803-24152802 Glycine max
Glyma.13G128600 10.0kb downstream 10.0kb downstream 12000 true Chr13: 24130803-24142802 Glycine max
Glyma.13G128600 10.0kb downstream 10.0kb downstream 10000 false Chr13: 24130803-24140802 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030415 5273 Angiosperm View MSA
122240880 5265 Fabidae Singleton cluster - no MSA
123985842 5270 Rosid Singleton cluster - no MSA
123561230 5271 Pentapetalae Singleton cluster - no MSA
122596021 5272 Eudicot Singleton cluster - no MSA
121299593 5274 Embryophyte View MSA
123337448 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.92194 0.0 52.2374    
cufflinks 7.99706 0.0 47.7574    
cufflinks 5.78667 0.0 39.3485   Low
cufflinks 8.16162 0.0 47.8938    
cufflinks 9.96896 0.0 44.4291    
cufflinks 14.3852 0.0 68.7752   High
cufflinks 10.5556 0.0 55.2955    
cufflinks 12.4736 0.0 51.7145   High
cufflinks 10.6549 0.0 45.9292    
cufflinks 1.011        
cufflinks 0.773        
cufflinks 0.583       Low
cufflinks 1.106       High
cufflinks 1.439       High
cufflinks 0.432       Low
cufflinks 0.684        
cufflinks 0.89        
cufflinks 0.933        
cufflinks 0.865        
cufflinks 0.663        
cufflinks 0.687        
cufflinks 0.683        
cufflinks 0.77        
cufflinks 0.938        
cufflinks 0.711        
cufflinks 0.733        

0 Strain