Gene : Glyma.13G132600 G. max Wm82.a2.v1
Defline:  (1 of 40) PF16135 - TPL-binding domain in jasmonate signalling (Jas) Genomic Order:  1326
Name:  ? Glyma.13G132600 Secondary Identifier:  ? PAC:30500223
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G132600 0.5kb upstream 0.5kb upstream 4744 true Chr13: 24497244-24501987 Glycine max
Glyma.13G132600 0.5kb upstream 0.5kb upstream 500 false Chr13: 24501488-24501987 Glycine max
Glyma.13G132600 0.5kb downstream 0.5kb downstream 4744 true Chr13: 24496744-24501487 Glycine max
Glyma.13G132600 0.5kb downstream 0.5kb downstream 500 false Chr13: 24496744-24497243 Glycine max
Glyma.13G132600 1.0kb upstream 1.0kb upstream 5244 true Chr13: 24497244-24502487 Glycine max
Glyma.13G132600 1.0kb upstream 1.0kb upstream 1000 false Chr13: 24501488-24502487 Glycine max
Glyma.13G132600 1.0kb downstream 1.0kb downstream 5244 true Chr13: 24496244-24501487 Glycine max
Glyma.13G132600 1.0kb downstream 1.0kb downstream 1000 false Chr13: 24496244-24497243 Glycine max
Glyma.13G132600 2.0kb upstream 2.0kb upstream 6244 true Chr13: 24497244-24503487 Glycine max
Glyma.13G132600 2.0kb upstream 2.0kb upstream 2000 false Chr13: 24501488-24503487 Glycine max
Glyma.13G132600 2.0kb downstream 2.0kb downstream 6244 true Chr13: 24495244-24501487 Glycine max
Glyma.13G132600 2.0kb downstream 2.0kb downstream 2000 false Chr13: 24495244-24497243 Glycine max
Glyma.13G132600 5.0kb upstream 5.0kb upstream 9244 true Chr13: 24497244-24506487 Glycine max
Glyma.13G132600 5.0kb upstream 5.0kb upstream 5000 false Chr13: 24501488-24506487 Glycine max
Glyma.13G132600 5.0kb downstream 5.0kb downstream 9244 true Chr13: 24492244-24501487 Glycine max
Glyma.13G132600 5.0kb downstream 5.0kb downstream 5000 false Chr13: 24492244-24497243 Glycine max
Glyma.13G132600 10.0kb upstream 10.0kb upstream 14244 true Chr13: 24497244-24511487 Glycine max
Glyma.13G132600 10.0kb upstream 10.0kb upstream 10000 false Chr13: 24501488-24511487 Glycine max
Glyma.13G132600 10.0kb downstream 10.0kb downstream 14244 true Chr13: 24487244-24501487 Glycine max
Glyma.13G132600 10.0kb downstream 10.0kb downstream 10000 false Chr13: 24487244-24497243 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307898 5265 Fabidae View MSA
124072132 5270 Rosid View MSA
123747463 5271 Pentapetalae View MSA
122794643 5272 Eudicot View MSA
122051104 5273 Angiosperm View MSA
121312296 5274 Embryophyte View MSA
123349483 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.03502 0.0 6.47674   Low
cufflinks 2.16877 0.0 11.8515    
cufflinks 2.46506 0.0 19.8336    
cufflinks 1.14902 0.0 9.71689   Low
cufflinks 3.86923 0.0 19.3336    
cufflinks 9.22818 0.0 39.9217   High
cufflinks 9.90445 0.0 42.1273   High
cufflinks 3.19278 0.0 18.453    
cufflinks 3.48064 0.0 20.6201    
cufflinks 0.197        
cufflinks 0.038     Low Low
cufflinks 0.163        
cufflinks 0.694       High
cufflinks 0.742       High
cufflinks 0.056       Low
cufflinks 0.165        
cufflinks 0.153        
cufflinks 0.2        
cufflinks 0.464       High
cufflinks 0.133        
cufflinks 0.054     Low Low
cufflinks 0.17        
cufflinks 0.167        
cufflinks 0.054     Low Low
cufflinks 0.137        
cufflinks 0.096        

0 Strain