Gene : Glyma.13G159900 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR15131 - SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1 Genomic Order:  1599
Name:  ? Glyma.13G159900 Secondary Identifier:  ? PAC:30503290
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G159900 0.5kb upstream 0.5kb upstream 6535 true Chr13: 27560235-27566769 Glycine max
Glyma.13G159900 0.5kb upstream 0.5kb upstream 500 false Chr13: 27560235-27560734 Glycine max
Glyma.13G159900 0.5kb downstream 0.5kb downstream 6535 true Chr13: 27560735-27567269 Glycine max
Glyma.13G159900 0.5kb downstream 0.5kb downstream 500 false Chr13: 27566770-27567269 Glycine max
Glyma.13G159900 1.0kb upstream 1.0kb upstream 7035 true Chr13: 27559735-27566769 Glycine max
Glyma.13G159900 1.0kb upstream 1.0kb upstream 1000 false Chr13: 27559735-27560734 Glycine max
Glyma.13G159900 1.0kb downstream 1.0kb downstream 7035 true Chr13: 27560735-27567769 Glycine max
Glyma.13G159900 1.0kb downstream 1.0kb downstream 1000 false Chr13: 27566770-27567769 Glycine max
Glyma.13G159900 2.0kb upstream 2.0kb upstream 8035 true Chr13: 27558735-27566769 Glycine max
Glyma.13G159900 2.0kb upstream 2.0kb upstream 2000 false Chr13: 27558735-27560734 Glycine max
Glyma.13G159900 2.0kb downstream 2.0kb downstream 8035 true Chr13: 27560735-27568769 Glycine max
Glyma.13G159900 2.0kb downstream 2.0kb downstream 2000 false Chr13: 27566770-27568769 Glycine max
Glyma.13G159900 5.0kb upstream 5.0kb upstream 11035 true Chr13: 27555735-27566769 Glycine max
Glyma.13G159900 5.0kb upstream 5.0kb upstream 5000 false Chr13: 27555735-27560734 Glycine max
Glyma.13G159900 5.0kb downstream 5.0kb downstream 11035 true Chr13: 27560735-27571769 Glycine max
Glyma.13G159900 5.0kb downstream 5.0kb downstream 5000 false Chr13: 27566770-27571769 Glycine max
Glyma.13G159900 10.0kb upstream 10.0kb upstream 16035 true Chr13: 27550735-27566769 Glycine max
Glyma.13G159900 10.0kb upstream 10.0kb upstream 10000 false Chr13: 27550735-27560734 Glycine max
Glyma.13G159900 10.0kb downstream 10.0kb downstream 16035 true Chr13: 27560735-27576769 Glycine max
Glyma.13G159900 10.0kb downstream 10.0kb downstream 10000 false Chr13: 27566770-27576769 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300091 5265 Fabidae View MSA
124060521 5270 Rosid View MSA
123737660 5271 Pentapetalae View MSA
122797190 5272 Eudicot View MSA
122043179 5273 Angiosperm View MSA
121344742 5274 Embryophyte View MSA
123426038 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.23305 0.0 30.7044    
cufflinks 9.10916 0.0 33.2084    
cufflinks 8.15426 0.0 30.7327    
cufflinks 10.6846 0.0 44.7459   High
cufflinks 8.06517 0.0 34.5587    
cufflinks 5.9234 0.0 24.2712   Low
cufflinks 10.7647 0.0 42.9846   High
cufflinks 10.0028 0.0 35.8847    
cufflinks 8.59941 0.0 36.6549    
cufflinks 0.427        
cufflinks 0.366        
cufflinks 0.632       High
cufflinks 0.454        
cufflinks 0.564        
cufflinks 0.533        
cufflinks 0.451        
cufflinks 0.328       Low
cufflinks 0.708       High
cufflinks 0.593       High
cufflinks 0.401        
cufflinks 0.417        
cufflinks 0.447        
cufflinks 0.425        
cufflinks 0.393        
cufflinks 0.403        
cufflinks 0.314       Low

0 Strain