Gene : Glyma.13G202500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13301//PTHR13301:SF79 - X-BOX TRANSCRIPTION FACTOR-RELATED Genomic Order:  2025
Name:  ? Glyma.13G202500 Secondary Identifier:  ? PAC:30505228
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1001 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G202500 0.5kb upstream 0.5kb upstream 11681 true Chr13: 31619252-31630932 Glycine max
Glyma.13G202500 0.5kb upstream 0.5kb upstream 500 false Chr13: 31619252-31619751 Glycine max
Glyma.13G202500 0.5kb downstream 0.5kb downstream 11681 true Chr13: 31619752-31631432 Glycine max
Glyma.13G202500 0.5kb downstream 0.5kb downstream 500 false Chr13: 31630933-31631432 Glycine max
Glyma.13G202500 1.0kb upstream 1.0kb upstream 12181 true Chr13: 31618752-31630932 Glycine max
Glyma.13G202500 1.0kb upstream 1.0kb upstream 1000 false Chr13: 31618752-31619751 Glycine max
Glyma.13G202500 1.0kb downstream 1.0kb downstream 12181 true Chr13: 31619752-31631932 Glycine max
Glyma.13G202500 1.0kb downstream 1.0kb downstream 1000 false Chr13: 31630933-31631932 Glycine max
Glyma.13G202500 2.0kb upstream 2.0kb upstream 13181 true Chr13: 31617752-31630932 Glycine max
Glyma.13G202500 2.0kb upstream 2.0kb upstream 2000 false Chr13: 31617752-31619751 Glycine max
Glyma.13G202500 2.0kb downstream 2.0kb downstream 13181 true Chr13: 31619752-31632932 Glycine max
Glyma.13G202500 2.0kb downstream 2.0kb downstream 2000 false Chr13: 31630933-31632932 Glycine max
Glyma.13G202500 5.0kb upstream 5.0kb upstream 16181 true Chr13: 31614752-31630932 Glycine max
Glyma.13G202500 5.0kb upstream 5.0kb upstream 5000 false Chr13: 31614752-31619751 Glycine max
Glyma.13G202500 5.0kb downstream 5.0kb downstream 16181 true Chr13: 31619752-31635932 Glycine max
Glyma.13G202500 5.0kb downstream 5.0kb downstream 5000 false Chr13: 31630933-31635932 Glycine max
Glyma.13G202500 10.0kb upstream 10.0kb upstream 21181 true Chr13: 31609752-31630932 Glycine max
Glyma.13G202500 10.0kb upstream 10.0kb upstream 10000 false Chr13: 31609752-31619751 Glycine max
Glyma.13G202500 10.0kb downstream 10.0kb downstream 21181 true Chr13: 31619752-31640932 Glycine max
Glyma.13G202500 10.0kb downstream 10.0kb downstream 10000 false Chr13: 31630933-31640932 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314851 5265 Fabidae View MSA
124068602 5270 Rosid View MSA
123746424 5271 Pentapetalae View MSA
122793475 5272 Eudicot View MSA
122046929 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.4036 0.0 35.7619    
cufflinks 15.9819 0.0 57.8206    
cufflinks 26.1994 0.0 92.8989 High High
cufflinks 22.0351 0.0 73.7906 High  
cufflinks 5.96268 0.0 20.4703    
cufflinks 3.20136 0.0 11.9624   Low
cufflinks 19.9961 0.0 65.3356    
cufflinks 11.4295 0.0 34.3948    
cufflinks 6.22661 0.0 19.4508    
cufflinks 2.885        
cufflinks 0.957       Low
cufflinks 5.577       High
cufflinks 1.22        
cufflinks 1.01       Low
cufflinks 4.162        
cufflinks 5.058        
cufflinks 0.927       Low
cufflinks 5.057        
cufflinks 3.946        
cufflinks 6.074       High
cufflinks 1.102        
cufflinks 4.866        
cufflinks 2.885        
cufflinks 0.7       Low
cufflinks 4.883        
cufflinks 0.971       Low

0 Strain